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0
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4
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1.4k
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Should the number of significantly DE genes rise with the number of SVs estimated (SVA package)?
sva
4.1 years ago by Aspire ▴ 370
0
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1
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1.4k
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Comment: C: Should the number of significantly DE genes rise with the number of SVs estimate
4.1 years ago by Aspire ▴ 370
0
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0
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1.3k
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Comment: C: Weird results in TopHat2 paired-end alignment
4.2 years ago by Aspire ▴ 370
0
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1
reply
1.4k
views
Comment: C: Providing R1,R2 to macs2
4.2 years ago by Aspire ▴ 370
0
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0
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1.4k
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Comment: C: Providing R1,R2 to macs2
4.2 years ago by Aspire ▴ 370
0
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1
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1.4k
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Comment: C: Providing R1,R2 to macs2
4.2 years ago by Aspire ▴ 370
2
votes
6
replies
1.4k
views
Providing R1,R2 to macs2
ChIP-Seq macs2
4.2 years ago by Aspire ▴ 370
1
vote
1
reply
943
views
Clarifying the meaning of Bowtie2's default alignment mode (noob question)
bowtie2
updated 4.2 years ago by 102k • written 4.2 years ago by ▴ 370
0
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0
replies
1.3k
views
Comment: C: Weird results in TopHat2 paired-end alignment
4.2 years ago by Aspire ▴ 370
2
votes
0
replies
2.0k
views
Answer: A: TLEN value is negative for both paired reads
4.2 years ago by Aspire ▴ 370
0
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0
replies
756
views
Comment: C: separating dataset by a specific character
4.2 years ago by Aspire ▴ 370
4
votes
7
replies
1.9k
views
RNA-SEQ where only a subset of genes is of interest
RNA-Seq deseq
updated 3 months ago by 86k • written 4.3 years ago by ▴ 370
0
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1
reply
1.9k
views
Comment: C: RNA-SEQ where only a subset of genes is of interest
4.3 years ago by Aspire ▴ 370
0
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0
replies
1.2k
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Comment: C: generate .tab file for snippy with filenames & paths
4.3 years ago by Aspire ▴ 370
0
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0
replies
1.1k
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Answer: A: Tophat alignment and -g parameter
4.3 years ago by Aspire ▴ 370
0
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3
replies
1.1k
views
Tophat alignment and -g parameter
RNA-Seq tophat
4.3 years ago by Aspire ▴ 370
0
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0
replies
1.1k
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Comment: C: Tophat alignment and -g parameter
4.3 years ago by Aspire ▴ 370
3
votes
1
reply
813
views
Htseq unable to process last read
RNA-Seq htseq-count
4.3 years ago by Aspire ▴ 370
2
votes
0
replies
813
views
Answer: A: Htseq unable to process last read
4.3 years ago by Aspire ▴ 370
0
votes
0
replies
2.2k
views
Answer: A: Why sequence length disturbution failed after adapter trimming: fastqc?
4.3 years ago by Aspire ▴ 370
1
vote
2
replies
3.0k
views
Comment: C: Is there any available code for DeSeq2 method in R?
4.3 years ago by Aspire ▴ 370
0
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0
replies
1.1k
views
Comment: C: How to choose the right model?
4.3 years ago by Aspire ▴ 370
0
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1
reply
1.1k
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Comment: C: How to choose the right model?
4.3 years ago by Aspire ▴ 370
0
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1
reply
1.1k
views
Comment: C: How to choose the right model?
4.3 years ago by Aspire ▴ 370
2
votes
6
replies
1.1k
views
How to choose the right model?
deseq2 RNA-Seq glm
updated 4.3 years ago by ★ 1.9k • written 4.3 years ago by ▴ 370
0
votes
0
replies
3.1k
views
Comment: C: Paired end sequencing in case of a short biological insert
4.3 years ago by Aspire ▴ 370
0
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1
reply
1.1k
views
Comment: C: Usefulness of paired-end sequencing (noob question)
4.3 years ago by Aspire ▴ 370
0
votes
4
replies
1.1k
views
Usefulness of paired-end sequencing (noob question)
RNA-Seq paired-end tophat
4.3 years ago by Aspire ▴ 370
0
votes
0
replies
3.1k
views
Comment: C: Paired end sequencing in case of a short biological insert
4.3 years ago by Aspire ▴ 370
5
votes
9
replies
3.1k
views
Paired end sequencing in case of a short biological insert
paired-end RNA-Seq
4.3 years ago by Aspire ▴ 370
0
votes
1
reply
3.1k
views
Comment: C: Paired end sequencing in case of a short biological insert
4.3 years ago by Aspire ▴ 370
7
votes
1
reply
1.8k
views
What is the importance of the rlog function (DESeq2) for downstream analysis?
deseq2
updated 4.5 years ago by 20k • written 4.5 years ago by ▴ 370
0
votes
1
reply
1.5k
views
Comment: C: Requirement of constant variance in limma-voom
4.5 years ago by Aspire ▴ 370
0
votes
1
reply
1.5k
views
Comment: C: Requirement of constant variance in limma-voom
4.5 years ago by Aspire ▴ 370
5
votes
5
replies
1.5k
views
Requirement of constant variance in limma-voom
voom
updated 4.5 years ago by 20k • written 4.5 years ago by ▴ 370
0
votes
0
replies
1.8k
views
Answer: A: What is the right way to convert probe names from Brainarray Custom CDF to Ensem
4.5 years ago by Aspire ▴ 370
0
votes
4
replies
1.8k
views
What is the right way to convert probe names from Brainarray Custom CDF to Ensembl ?
custom-cdf brainarray affymetrix microarray
4.5 years ago by Aspire ▴ 370
0
votes
0
replies
2.0k
views
Comment: C: What could be a reason for peaks called via Macs2 not appearing as real peaks in
4.5 years ago by Aspire ▴ 370
4
votes
3
replies
2.0k
views
What could be a reason for peaks called via Macs2 not appearing as real peaks in IGV?
macs2 igv
updated 4.5 years ago by 86k • written 4.5 years ago by ▴ 370
0
votes
0
replies
1.8k
views
Comment: C: Finding the cause for corrupt ChIP-Seq data
4.5 years ago by Aspire ▴ 370
0
votes
1
reply
1.8k
views
Comment: C: What is the right way to convert probe names from Brainarray Custom CDF to Ensem
4.6 years ago by Aspire ▴ 370
0
votes
0
replies
10k
views
Comment: C: R providing row numbers instead row names with read.csv?
4.6 years ago by Aspire ▴ 370
1
vote
1
reply
970
views
Should Affymetrix probe annotation include only specific gene biotypes?
microarrays affymetrix ensembl
updated 4.6 years ago by 88k • written 4.6 years ago by ▴ 370
0
votes
1
reply
10k
views
Comment: C: R providing row numbers instead row names with read.csv?
4.6 years ago by Aspire ▴ 370
0
votes
0
replies
1.3k
views
Why pileup values of MACS2 output have decimal values?
macs2
4.7 years ago by Aspire ▴ 370
3
votes
11
replies
1.8k
views
Finding the cause for corrupt ChIP-Seq data
ChIP-Seq
updated 4.8 years ago by 7.0k • written 4.8 years ago by ▴ 370
0
votes
0
replies
1.8k
views
Comment: C: Finding the cause for corrupt ChIP-Seq data
4.8 years ago by Aspire ▴ 370
0
votes
1
reply
1.8k
views
Comment: C: Finding the cause for corrupt ChIP-Seq data
4.8 years ago by Aspire ▴ 370
0
votes
0
replies
1.8k
views
Comment: C: Finding the cause for corrupt ChIP-Seq data
4.8 years ago by Aspire ▴ 370
0
votes
0
replies
1.8k
views
Comment: C: Finding the cause for corrupt ChIP-Seq data
4.8 years ago by Aspire ▴ 370
151 results • Page 3 of 4
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