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5
votes
1
reply
14k
views
Answer: Answer: How does samtools markdup works?
updated 2.1 years ago by 44k • written 4.9 years ago by ▴ 100
0
votes
1
reply
1.4k
views
annotation parameter in ChIPQC
ChIP-Seq ChIPQC
updated 3.3 years ago by • 0 • written 4.4 years ago by ▴ 100
0
votes
1
reply
938
views
Getting position of features of chromosomes
genome centromere telomere
updated 3.8 years ago by ▴ 40 • written 4.5 years ago by ▴ 100
0
votes
0
replies
1.3k
views
Comment: C: Does read length of RNA seq affects the results ?
3.9 years ago by chaudharyc61 ▴ 100
5
votes
9
replies
1.3k
views
Does read length of RNA seq affects the results ?
RNA-Seq next-gen DESEq2
updated 3.9 years ago by ▴ 590 • written 3.9 years ago by ▴ 100
0
votes
0
replies
556
views
Plotting telomere to centromere data pf a genome
next-gen R ChIP-Seq
4.0 years ago by chaudharyc61 ▴ 100
0
votes
1
reply
669
views
Replicates in Bisulfite data
Bisulfite-Seq Methylation
updated 4.1 years ago by 15k • written 4.1 years ago by ▴ 100
2
votes
6
replies
2.6k
views
Bowtie2 Alignment Error
bowtie2
updated 4.3 years ago by • 0 • written 5.5 years ago by ▴ 100
2
votes
2
replies
829
views
To get correlation of different ChIP-seq samples
ChIP-Seq genome next-gen
updated 4.4 years ago by ▴ 540 • written 4.4 years ago by ▴ 100
0
votes
0
replies
30k
views
Comment: C: Positive Negative Strand
4.5 years ago by chaudharyc61 ▴ 100
0
votes
0
replies
887
views
error in reading bam file in methylKit
methylKit bisulphite
4.5 years ago by chaudharyc61 ▴ 100
0
votes
1
reply
1.6k
views
Comment: C: About Mapping Efficiency of Bisulfite aligners
4.7 years ago by chaudharyc61 ▴ 100
0
votes
1
reply
1.6k
views
Comment: C: About Mapping Efficiency of Bisulfite aligners
4.7 years ago by chaudharyc61 ▴ 100
1
vote
1
reply
753
views
How to smooth methylation data
Bisulfite-seq Analysis
updated 4.8 years ago by 88k • written 4.8 years ago by ▴ 100
0
votes
1
reply
1.4k
views
Extracting Multiple Mapped reads from Bismark output
alignment BS-seq data
updated 4.9 years ago by ▴ 330 • written 4.9 years ago by ▴ 100
0
votes
1
reply
1.6k
views
Comment: C: About Mapping Efficiency of Bisulfite aligners
4.9 years ago by chaudharyc61 ▴ 100
4
votes
7
replies
1.6k
views
About Mapping Efficiency of Bisulfite aligners
BS-seq Methylation
updated 4.9 years ago by 104k • written 4.9 years ago by ▴ 100
3
votes
2
replies
1.7k
views
Plotting CpG methylation
methylation
updated 4.9 years ago by ★ 3.4k • written 4.9 years ago by ▴ 100
1
vote
3
replies
1.4k
views
About Mapping Efficiency of Bisulfite aligners
alignment Bisulfite-sequencing
updated 2.8 years ago by ▴ 150 • written 4.9 years ago by ▴ 100
0
votes
0
replies
35k
views
Answer: A: What is P value and Padj value in DEGs ?
updated 4.9 years ago by 85k • written 4.9 years ago by ▴ 100
7
votes
3
replies
3.9k
views
Handling replicates in Chip-seq
ChIP-Seq replicates
updated 4.9 years ago by 20 • written 5.4 years ago by ▴ 100
3
votes
3
replies
870
views
Identifying differential methylation regions
methyl-seq
updated 4.9 years ago by 85k • written 4.9 years ago by ▴ 100
0
votes
1
reply
701
views
ChIP-seq Input correlation
ChIP-seq correlation
5.3 years ago by chaudharyc61 ▴ 100
0
votes
0
replies
1.0k
views
Comment: C: Error in peak calling using SPP package
5.3 years ago by chaudharyc61 ▴ 100
0
votes
1
reply
1.8k
views
DiffBind package showing warnings and unable to analyse my data
ChIP-Seq DiffBind
updated 5.4 years ago by ★ 2.1k • written 5.4 years ago by ▴ 100
1
vote
0
replies
1.9k
views
Answer: C: idr command line error
5.4 years ago by chaudharyc61 ▴ 100
3
votes
8
replies
1.9k
views
idr command line error
idr ChIP-Seq
updated 5.4 years ago by 5.9k • written 5.4 years ago by ▴ 100
0
votes
1
reply
1.7k
views
Comment: C: Bedtools Intersect related
5.4 years ago by chaudharyc61 ▴ 100
0
votes
1
reply
1.7k
views
Comment: C: Bedtools Intersect related
5.4 years ago by chaudharyc61 ▴ 100
0
votes
5
replies
1.7k
views
Bedtools Intersect related
ChIP-Seq bed bedtools
updated 20 months ago by 44k • written 5.4 years ago by ▴ 100
0
votes
0
replies
3.4k
views
Comment: C: MACS2 result of FDR
5.4 years ago by chaudharyc61 ▴ 100
2
votes
3
replies
3.4k
views
MACS2 result of FDR
macs2 false discovery rate q-value chip-seq
updated 5.4 years ago by 147k • written 5.4 years ago by ▴ 100
0
votes
1
reply
1.6k
views
Comment: C: Peak calling using spp package
5.4 years ago by chaudharyc61 ▴ 100
1
vote
3
replies
1.6k
views
Peak calling using spp package
ChIP-Seq peak calling spp package
updated 5.4 years ago by 104k • written 5.4 years ago by ▴ 100
0
votes
2
replies
1.0k
views
Error in peak calling using SPP package
ChIP-Seq Peak calling spp
5.5 years ago by chaudharyc61 ▴ 100
0
votes
1
reply
2.3k
views
MACS2 result analysis
peak-calling macs2 ChIP-Seq
updated 17 months ago by 44k • written 5.5 years ago by ▴ 100
0
votes
1
reply
2.6k
views
Comment: C: Bowtie2 Alignment Error
5.5 years ago by chaudharyc61 ▴ 100
37 results • Page 1 of 1
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