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Answer: Answer: Tuning seurat integration strength to prevent overcorrection
2.2 years ago by fracarb8 ★ 1.7k
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0
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906
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Answer: Answer: What is the best way to process a metadata file that SEURAT can read?
2.2 years ago by fracarb8 ★ 1.7k
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4.0k
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Answer: Answer: SCTransform and differential gene expression
2.3 years ago by fracarb8 ★ 1.7k
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2.7k
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Comment: Comment: Any script that can produce different mutations of protein sequences at specifie
2.3 years ago by fracarb8 ★ 1.7k
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2
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2.8k
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Comment: Comment: scRNA read count is in csv, not '.h5ad' format, do I need to convert it into Ann
2.3 years ago by fracarb8 ★ 1.7k
0
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1
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2.8k
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Comment: Comment: scRNA read count is in csv, not '.h5ad' format, do I need to convert it into Ann
2.3 years ago by fracarb8 ★ 1.7k
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1.1k
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Comment: Comment: Pearson correlation matrix heat map. The different colors represent Pearson corr
2.4 years ago by fracarb8 ★ 1.7k
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0
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1.1k
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Answer: Answer: Clustered, annotated dotplot to scRNA-Seq data
2.4 years ago by fracarb8 ★ 1.7k
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1
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3.0k
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Comment: Comment: ESTIMATE tumor purity
2.4 years ago by fracarb8 ★ 1.7k
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3.0k
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Answer: Answer: ESTIMATE tumor purity
2.4 years ago by fracarb8 ★ 1.7k
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1
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3.5k
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Answer: Answer: What to do with Seurat metadata and counts in separate text files?
2.5 years ago by fracarb8 ★ 1.7k
2
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1
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1.3k
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Answer: Answer: How to add Ensembl id to cluster.markers in Seurat
2.5 years ago by fracarb8 ★ 1.7k
2
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0
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1.3k
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Answer: Answer: Error on R shiny app metaOmics; object %AND% not found
2.5 years ago by fracarb8 ★ 1.7k
1
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1
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1.3k
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Comment: Comment: Error on R shiny app metaOmics; object %AND% not found
2.5 years ago by fracarb8 ★ 1.7k
0
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0
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2.0k
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Answer: Answer: Automatic rename of filenames with bash script
2.5 years ago by fracarb8 ★ 1.7k
1
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0
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2.5k
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Comment: Comment: Normalization of RNASeq counts with a reference gene (/genes)
2.5 years ago by fracarb8 ★ 1.7k
0
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1
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601
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Comment: Comment: Content of Rscript gone after updating
2.5 years ago by fracarb8 ★ 1.7k
1
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1
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2.5k
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Answer: Answer: Normalization of RNASeq counts with a reference gene (/genes)
2.6 years ago by fracarb8 ★ 1.7k
3
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1
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1.2k
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Answer: Answer: use gene symbol in heatmap instead of ensemble geneID
2.6 years ago by fracarb8 ★ 1.7k
0
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0
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1.3k
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Answer: Answer: How to test for gender bias in RNA seq experiment ?
2.6 years ago by fracarb8 ★ 1.7k
2
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0
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678
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Comment: Comment: What does it mean by "conformational space"?
2.6 years ago by fracarb8 ★ 1.7k
1
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0
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1.1k
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Answer: Answer: When looking at a heatmap created by DESeq2, how can I find what genes are in sp
2.7 years ago by fracarb8 ★ 1.7k
1
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0
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2.5k
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Answer: Answer: MAST for scRNA-seq
2.7 years ago by fracarb8 ★ 1.7k
0
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1
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2.3k
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Comment: Comment: Seurat cluster label transfer
2.7 years ago by fracarb8 ★ 1.7k
1
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1
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3.9k
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Comment: Comment: addModuleScore and enrichment score methods
2.7 years ago by fracarb8 ★ 1.7k
0
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1
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2.3k
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Comment: Comment: highlight subset of cells on tSNE plot
2.7 years ago by fracarb8 ★ 1.7k
1
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0
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948
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Comment: Comment: RNA-Sequencing on RStudio vs batch scripts on Terminal
2.7 years ago by fracarb8 ★ 1.7k
0
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1
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594
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Answer: Answer: How to get DEG considering "clusters" and "samples" at the same time
2.7 years ago by fracarb8 ★ 1.7k
1
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0
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2.1k
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Comment: Comment: Reanalyzing data after Seurat subset
2.7 years ago by fracarb8 ★ 1.7k
1
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0
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4.0k
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Comment: Comment: Seurat Dotplot _ How can I have different panels on my doplot?
2.8 years ago by fracarb8 ★ 1.7k
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0
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2.4k
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Answer: Answer: Is there a tool for plotting protein structures and domains?
2.8 years ago by fracarb8 ★ 1.7k
0
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0
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463
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Data Preparation for single-cell Machine Learning classification (svm + RF)
seurat machine-learning scRNA-Seq
2.8 years ago by fracarb8 ★ 1.7k
1
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0
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1.3k
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Comment: Comment: How can I add the information at the end of the line to the beginning of the lin
2.8 years ago by fracarb8 ★ 1.7k
2
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1
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1.3k
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Answer: Answer: How can I add the information at the end of the line to the beginning of the lin
2.8 years ago by fracarb8 ★ 1.7k
2
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0
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1.5k
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Answer: Answer: Enrichment plot in R with custom pathways
2.8 years ago by fracarb8 ★ 1.7k
0
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0
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1.2k
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Answer: Answer: scRNA and stemness score
2.8 years ago by fracarb8 ★ 1.7k
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0
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3.6k
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Answer: Answer: Spatial transcriptomics without the h5 file
2.8 years ago by fracarb8 ★ 1.7k
1
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0
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753
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Answer: Answer: Which method works best for analysing ONE sample of scRNA-seq data?
2.9 years ago by fracarb8 ★ 1.7k
0
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0
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2.1k
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Answer: Answer: Sub clustering from Seurat Object
2.9 years ago by fracarb8 ★ 1.7k
2
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1
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4.1k
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Answer: Answer: How can I colour UMAP by sample batches
2.9 years ago by fracarb8 ★ 1.7k
0
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0
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941
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Comment: Comment: How to determine which gene contribute the most to a specific trait.
2.9 years ago by fracarb8 ★ 1.7k
2
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0
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1.7k
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Comment: Comment: Forcing Seurat to include certain genes during integration
2.9 years ago by fracarb8 ★ 1.7k
4
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2
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1.7k
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Answer: Answer: Forcing Seurat to include certain genes during integration
2.9 years ago by fracarb8 ★ 1.7k
1
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1
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1.5k
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Comment: Comment: Comparison between structure of two protein PDB files
3.0 years ago by fracarb8 ★ 1.7k
0
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1
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8.5k
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Comment: Comment: conversion of ensembl to gene_symbol in seurat
3.0 years ago by fracarb8 ★ 1.7k
1
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0
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2.1k
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Comment: Comment: Help with R code to get a unique list
3.0 years ago by fracarb8 ★ 1.7k
0
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1
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9.9k
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Comment: Comment: seurat, subcluster and trajectory analysis (Monocle 3)
3.0 years ago by fracarb8 ★ 1.7k
1
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1
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9.9k
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Answer: Answer: seurat, subcluster and trajectory analysis (Monocle 3)
3.0 years ago by fracarb8 ★ 1.7k
0
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1
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6.7k
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Answer: Answer: What is a count matrix for input into Seurat supposed to look like?
3.0 years ago by fracarb8 ★ 1.7k
1
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0
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1.1k
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Answer: Answer: Estimate cell types proportion by single cell expressions data and gene markers
3.0 years ago by fracarb8 ★ 1.7k
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