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Answer: Answer: Bulk RNAseq with cell type deconvolution?
2.6 years ago by theodore.killian ▴ 30
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623
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How to access WGS files on TCGA for melanoma/SKCM
WGS circDNA TCGA
3.2 years ago by theodore.killian ▴ 30
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1.5k
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Comment: Comment: clusterProfiler won't read gene list
3.2 years ago by theodore.killian ▴ 30
3
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4
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4.3k
views
6 follow
Gene correlation with single cell data?
RNA-Seq gene
updated 11 months ago by ▴ 10 • written 3.7 years ago by ▴ 30
1
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2
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4.4k
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Using filtered_feature_bc_matrix for scRNAseq samples
rna-seq single-cell
updated 3.9 years ago by 13k • written 3.9 years ago by ▴ 30
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0
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867
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Comment: C: Using bulk RNAseq GSEA methods on single cel RNAseq results?
4.0 years ago by theodore.killian ▴ 30
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2
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867
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Using bulk RNAseq GSEA methods on single cel RNAseq results?
RNA-Seq
4.0 years ago by theodore.killian ▴ 30
0
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3
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1.5k
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clusterProfiler won't read gene list
gsea software error clusterProfiler
3.2 years ago by theodore.killian ▴ 30
0
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0
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774
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Comment: C: retain UMIs when converting bam to vcf file
4.1 years ago by theodore.killian ▴ 30
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2
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774
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retain UMIs when converting bam to vcf file
vcf bam RNA-Seq sequencing
updated 4.1 years ago by 14k • written 4.1 years ago by ▴ 30
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0
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621
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Efficiently obtaining genomic transcript levels of thousands of patient samples by cancer types
cancer RNA-Seq
4.2 years ago by theodore.killian ▴ 30
2
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1
reply
716
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Which reference genome file is correct?
RNA-Seq alignment assembly genome
updated 4.2 years ago by 147k • written 4.2 years ago by ▴ 30
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1
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1.3k
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Comment: C: Variant Calling scRNA-seq data for KRAS mutations
4.2 years ago by theodore.killian ▴ 30
3
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6
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1.3k
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Variant Calling scRNA-seq data for KRAS mutations
rna-seq snp
4.2 years ago by theodore.killian ▴ 30
0
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1
reply
648
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Why don't all GOIDs and all ENTEZIDs appear in db query?
R
4.6 years ago by theodore.killian ▴ 30
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1
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1.1k
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mapIDs function not obtaining all GOIDs for organism
R go RNA-Seq
4.6 years ago by theodore.killian ▴ 30
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0
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1.5k
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Answer: A: Msc in bioinformatics at Gent University
5.5 years ago by theodore.killian ▴ 30
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1
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3.5k
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Comment: A: Is computing TPM from read count from DEseq2 count matrix necessary?
5.5 years ago by theodore.killian ▴ 30
2
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3
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3.5k
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Is computing TPM from read count from DEseq2 count matrix necessary?
RNA-Seq R gene
5.5 years ago by theodore.killian ▴ 30
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