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949
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Comment: Comment: How to identify additional SNPs on EPICv2
11 weeks ago by Papyrus ★ 3.1k
2
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2
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949
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Answer: Answer: How to identify additional SNPs on EPICv2
12 weeks ago by Papyrus ★ 3.1k
0
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0
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541
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Comment: Comment: After doublet detection in 10x scRNA-Seq data, there is still evidence of double
3 months ago by Papyrus ★ 3.1k
1
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0
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567
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Comment: Comment: Enrichment analyses (GO TERM etc)
3 months ago by Papyrus ★ 3.1k
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0
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838
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Comment: Comment: Annotating Illumna epic probes
4 months ago by Papyrus ★ 3.1k
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1
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838
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Comment: Comment: Annotating Illumna epic probes
4 months ago by Papyrus ★ 3.1k
1
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1
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464
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Answer: Answer: statistical testing for MS/MS proteomics bulkd samples
7 months ago by Papyrus ★ 3.1k
1
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1
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1.3k
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Comment: Comment: error from msigdbr
10 months ago by Papyrus ★ 3.1k
1
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1
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1.3k
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Answer: Answer: error from msigdbr
10 months ago by Papyrus ★ 3.1k
1
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1
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975
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Comment: Comment: How can I create an aesthetic gene neighborhood diagram from CSV data to showcas
10 months ago by Papyrus ★ 3.1k
0
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0
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644
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Comment: Comment: Creating a Single-Cell Signature Matrix for Bulk RNA-seq Deconvolution
11 months ago by Papyrus ★ 3.1k
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0
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2.6k
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Comment: Comment: Logfold change (Limma Package) in methylation association studies
12 months ago by Papyrus ★ 3.1k
2
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0
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1.0k
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Comment: Comment: Normalization of samples with very different transcriptomic profiles
12 months ago by Papyrus ★ 3.1k
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0
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2.5k
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Answer: Answer: Illumina EPIC v2 IlmnIDs and probe names
12 months ago by Papyrus ★ 3.1k
0
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0
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6.0k
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Comment: Comment: Difference in Bismark output methylation call files and coverage files
13 months ago by Papyrus ★ 3.1k
0
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0
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638
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Comment: Comment: minfi::getQC - badsamplecutoff 10.5
13 months ago by Papyrus ★ 3.1k
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0
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1.7k
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Comment: Comment: Seurat v5 and how to correctly integrate across multiple experiments
13 months ago by Papyrus ★ 3.1k
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0
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1.3k
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Answer: Answer: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
13 months ago by Papyrus ★ 3.1k
2
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1
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886
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Answer: Answer: Is therer any suggestions on mapping rate of WGBS data?
13 months ago by Papyrus ★ 3.1k
0
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0
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1.3k
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Comment: Comment: DESeq: too low p-value for RNAseq
14 months ago by Papyrus ★ 3.1k
0
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1
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1.3k
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Comment: Comment: DESeq: too low p-value for RNAseq
14 months ago by Papyrus ★ 3.1k
1
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0
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879
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Comment: Comment: representing PCs as marginal distribution on x and Y acis
15 months ago by Papyrus ★ 3.1k
1
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1
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879
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Answer: Answer: representing PCs as marginal distribution on x and Y acis
15 months ago by Papyrus ★ 3.1k
2
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2
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1.2k
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Answer: Answer: Tutorial for analyzing WGBS data
15 months ago by Papyrus ★ 3.1k
1
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1
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2.0k
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
16 months ago by Papyrus ★ 3.1k
1
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2
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2.0k
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
16 months ago by Papyrus ★ 3.1k
2
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1
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746
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Answer: Answer: Do people use M-value in WGBS?
18 months ago by Papyrus ★ 3.1k
2
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1
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1.3k
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Comment: Comment: 4 Fastq files for a single run generated by 10X
18 months ago by Papyrus ★ 3.1k
0
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1
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736
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Comment: Comment: Fisher exact test on different gene sets
20 months ago by Papyrus ★ 3.1k
2
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0
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1.1k
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Answer: Answer: IDAT or Txt MINFI or LIMMA?
22 months ago by Papyrus ★ 3.1k
0
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0
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2.2k
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Comment: Comment: Gene Set Comparison Without Expression Data
22 months ago by Papyrus ★ 3.1k
1
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1
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2.2k
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Comment: Comment: Gene Set Comparison Without Expression Data
22 months ago by Papyrus ★ 3.1k
0
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1
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2.2k
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Comment: Comment: Gene Set Comparison Without Expression Data
22 months ago by Papyrus ★ 3.1k
1
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0
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1.9k
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Answer: Answer: QC Illumina EPIC array: Removing SNPs at CpG sites
22 months ago by Papyrus ★ 3.1k
2
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1
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1.4k
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Answer: Answer: count number of GC for a given genomic ranges
22 months ago by Papyrus ★ 3.1k
0
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1
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1.4k
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Answer: Answer: DMR Analysis for RRBS: what annotation file to I use?
22 months ago by Papyrus ★ 3.1k
0
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0
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1.2k
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Comment: Comment: minfi::getQC - is default badsamplecutoff of 10.5 always appropriate? ~half of s
23 months ago by Papyrus ★ 3.1k
1
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0
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889
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Comment: Comment: Are there pipelines to analyze the Quality Controls for ATAC-seq and ChIP-seq da
23 months ago by Papyrus ★ 3.1k
1
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0
replies
1.8k
views
Answer: Answer: How to perfrom a statistical test on a 3-way Venn Diagram
23 months ago by Papyrus ★ 3.1k
1
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1
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2.2k
views
Comment: Comment: Gene Set Comparison Without Expression Data
23 months ago by Papyrus ★ 3.1k
1
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1
reply
4.5k
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Comment: Comment: Tools for bulk RNA-seq celltype deconvolution
23 months ago by Papyrus ★ 3.1k
12
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7
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4.5k
views
Tools for bulk RNA-seq celltype deconvolution
composition deconvolution bulk RNA-seq celltypes
updated 23 months ago by • 0 • written 3.9 years ago by ★ 3.1k
0
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1
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2.2k
views
Comment: Comment: Gene Set Comparison Without Expression Data
23 months ago by Papyrus ★ 3.1k
2
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1
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2.2k
views
Answer: Answer: Gene Set Comparison Without Expression Data
23 months ago by Papyrus ★ 3.1k
0
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0
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1.3k
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Comment: Comment: Boxplot of contrasts and genes together
24 months ago by Papyrus ★ 3.1k
0
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1
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1.3k
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Answer: Answer: Boxplot of contrasts and genes together
24 months ago by Papyrus ★ 3.1k
2
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1
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1.5k
views
Comment: Comment: Blacklist for bacterial genome [ChIPseq]?
24 months ago by Papyrus ★ 3.1k
1
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0
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853
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Comment: Comment: Choosing the right batch effect control algorithm for bulk RNA-seq data meta-ana
2.0 years ago by Papyrus ★ 3.1k
1
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1
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1.9k
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Comment: Comment: Obtain counts for specific genes with ChIP-seq data without peak calling
2.0 years ago by Papyrus ★ 3.1k
1
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1
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1.6k
views
Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
2.0 years ago by Papyrus ★ 3.1k
342 results • Page 1 of 7
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