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224
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Answer: Answer: statistical testing for MS/MS proteomics bulkd samples
4 weeks ago by Papyrus ★ 3.0k
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1
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544
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Comment: Comment: error from msigdbr
4 months ago by Papyrus ★ 3.0k
1
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1
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544
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Answer: Answer: error from msigdbr
4 months ago by Papyrus ★ 3.0k
1
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1
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574
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Comment: Comment: How can I create an aesthetic gene neighborhood diagram from CSV data to showcas
4 months ago by Papyrus ★ 3.0k
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0
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316
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Comment: Comment: Creating a Single-Cell Signature Matrix for Bulk RNA-seq Deconvolution
4 months ago by Papyrus ★ 3.0k
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0
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2.1k
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Comment: Comment: Logfold change (Limma Package) in methylation association studies
5 months ago by Papyrus ★ 3.0k
2
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0
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560
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Comment: Comment: Normalization of samples with very different transcriptomic profiles
5 months ago by Papyrus ★ 3.0k
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0
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1.4k
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Answer: Answer: Illumina EPIC v2 IlmnIDs and probe names
6 months ago by Papyrus ★ 3.0k
0
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0
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4.9k
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Comment: Comment: Difference in Bismark output methylation call files and coverage files
6 months ago by Papyrus ★ 3.0k
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0
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388
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Comment: Comment: minfi::getQC - badsamplecutoff 10.5
6 months ago by Papyrus ★ 3.0k
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0
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750
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Comment: Comment: Seurat v5 and how to correctly integrate across multiple experiments
6 months ago by Papyrus ★ 3.0k
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0
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725
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Answer: Answer: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
6 months ago by Papyrus ★ 3.0k
2
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1
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519
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Answer: Answer: Is therer any suggestions on mapping rate of WGBS data?
6 months ago by Papyrus ★ 3.0k
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0
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847
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Comment: Comment: DESeq: too low p-value for RNAseq
7 months ago by Papyrus ★ 3.0k
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1
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847
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Comment: Comment: DESeq: too low p-value for RNAseq
7 months ago by Papyrus ★ 3.0k
1
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0
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576
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Comment: Comment: representing PCs as marginal distribution on x and Y acis
8 months ago by Papyrus ★ 3.0k
1
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1
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576
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Answer: Answer: representing PCs as marginal distribution on x and Y acis
8 months ago by Papyrus ★ 3.0k
2
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2
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788
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Answer: Answer: Tutorial for analyzing WGBS data
8 months ago by Papyrus ★ 3.0k
1
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1
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1.4k
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
9 months ago by Papyrus ★ 3.0k
1
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2
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1.4k
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
9 months ago by Papyrus ★ 3.0k
2
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1
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549
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Answer: Answer: Do people use M-value in WGBS?
11 months ago by Papyrus ★ 3.0k
2
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1
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951
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Comment: Comment: 4 Fastq files for a single run generated by 10X
12 months ago by Papyrus ★ 3.0k
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1
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519
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Comment: Comment: Fisher exact test on different gene sets
13 months ago by Papyrus ★ 3.0k
2
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0
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835
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Answer: Answer: IDAT or Txt MINFI or LIMMA?
15 months ago by Papyrus ★ 3.0k
0
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0
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1.6k
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Comment: Comment: Gene Set Comparison Without Expression Data
15 months ago by Papyrus ★ 3.0k
1
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1
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1.6k
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Comment: Comment: Gene Set Comparison Without Expression Data
15 months ago by Papyrus ★ 3.0k
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1
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1.6k
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Comment: Comment: Gene Set Comparison Without Expression Data
15 months ago by Papyrus ★ 3.0k
1
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0
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1.4k
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Answer: Answer: QC Illumina EPIC array: Removing SNPs at CpG sites
16 months ago by Papyrus ★ 3.0k
2
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1
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1.1k
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Answer: Answer: count number of GC for a given genomic ranges
16 months ago by Papyrus ★ 3.0k
0
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1
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1.1k
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Answer: Answer: DMR Analysis for RRBS: what annotation file to I use?
16 months ago by Papyrus ★ 3.0k
0
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0
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920
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Comment: Comment: minfi::getQC - is default badsamplecutoff of 10.5 always appropriate? ~half of s
16 months ago by Papyrus ★ 3.0k
1
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0
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648
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Comment: Comment: Are there pipelines to analyze the Quality Controls for ATAC-seq and ChIP-seq da
16 months ago by Papyrus ★ 3.0k
1
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0
replies
1.3k
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Answer: Answer: How to perfrom a statistical test on a 3-way Venn Diagram
16 months ago by Papyrus ★ 3.0k
1
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1
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1.6k
views
Comment: Comment: Gene Set Comparison Without Expression Data
16 months ago by Papyrus ★ 3.0k
1
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1
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3.6k
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Comment: Comment: Tools for bulk RNA-seq celltype deconvolution
16 months ago by Papyrus ★ 3.0k
12
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7
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3.6k
views
Tools for bulk RNA-seq celltype deconvolution
composition deconvolution bulk RNA-seq celltypes
updated 16 months ago by • 0 • written 3.4 years ago by ★ 3.0k
0
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1
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1.6k
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Comment: Comment: Gene Set Comparison Without Expression Data
16 months ago by Papyrus ★ 3.0k
2
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1
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1.6k
views
Answer: Answer: Gene Set Comparison Without Expression Data
16 months ago by Papyrus ★ 3.0k
0
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0
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964
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Comment: Comment: Boxplot of contrasts and genes together
17 months ago by Papyrus ★ 3.0k
0
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1
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964
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Answer: Answer: Boxplot of contrasts and genes together
17 months ago by Papyrus ★ 3.0k
2
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1
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1.2k
views
Comment: Comment: Blacklist for bacterial genome [ChIPseq]?
17 months ago by Papyrus ★ 3.0k
1
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0
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654
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Comment: Comment: Choosing the right batch effect control algorithm for bulk RNA-seq data meta-ana
17 months ago by Papyrus ★ 3.0k
1
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1
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1.5k
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Comment: Comment: Obtain counts for specific genes with ChIP-seq data without peak calling
17 months ago by Papyrus ★ 3.0k
1
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1
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1.2k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
17 months ago by Papyrus ★ 3.0k
1
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1
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1.2k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
17 months ago by Papyrus ★ 3.0k
0
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0
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438
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Comment: Comment: Suggestion for enrichment analysis for small microarray set.
17 months ago by Papyrus ★ 3.0k
1
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1
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1.2k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
17 months ago by Papyrus ★ 3.0k
1
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1
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1.5k
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Comment: Comment: Obtain counts for specific genes with ChIP-seq data without peak calling
17 months ago by Papyrus ★ 3.0k
1
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1
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1.5k
views
Answer: Answer: Obtain counts for specific genes with ChIP-seq data without peak calling
17 months ago by Papyrus ★ 3.0k
1
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1
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637
views
Comment: Comment: Filtering content in heatmap to highest values
17 months ago by Papyrus ★ 3.0k
336 results • Page 1 of 7
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