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Answer: Answer: Reorder GO terms using R
17 months ago by Papyrus ★ 3.0k
3
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1
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2.2k
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Comment: Comment: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
18 months ago by Papyrus ★ 3.0k
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0
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1.3k
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Comment: Comment: Splitting heatmap
18 months ago by Papyrus ★ 3.0k
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1.3k
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Comment: Comment: Splitting heatmap
18 months ago by Papyrus ★ 3.0k
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1
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1.3k
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Comment: Comment: Splitting heatmap
18 months ago by Papyrus ★ 3.0k
1
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1
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1.8k
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Answer: Answer: scRNA-seq: How does cell number in clusters affect the number of DE genes?
19 months ago by Papyrus ★ 3.0k
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0
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572
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Comment: Comment: pipeline for correlation of RNASeq and Methylation data
19 months ago by Papyrus ★ 3.0k
2
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1
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1.2k
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Comment: Comment: Testing overlap significance of three gene sets using the hypergeometric distrib
19 months ago by Papyrus ★ 3.0k
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612
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Comment: Comment: DMRcaller Min. Reads per Cytosine
21 months ago by Papyrus ★ 3.0k
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490
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Comment: Comment: linking methylation/SNPs to gene expression
21 months ago by Papyrus ★ 3.0k
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2.2k
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Comment: Comment: How does enrichGO function calculated p-value?
21 months ago by Papyrus ★ 3.0k
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0
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1.6k
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Comment: Comment: Design and Contrast Matrix in Limma Analysis
21 months ago by Papyrus ★ 3.0k
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1
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1.6k
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Comment: Comment: Design and Contrast Matrix in Limma Analysis
21 months ago by Papyrus ★ 3.0k
2
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1
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1.6k
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Answer: Answer: Design and Contrast Matrix in Limma Analysis
21 months ago by Papyrus ★ 3.0k
1
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1
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2.3k
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
22 months ago by Papyrus ★ 3.0k
0
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1
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2.3k
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
22 months ago by Papyrus ★ 3.0k
3
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1
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2.3k
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Answer: Answer: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
22 months ago by Papyrus ★ 3.0k
0
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0
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1.4k
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Comment: Comment: Analysis of cell ranger ARC output data
22 months ago by Papyrus ★ 3.0k
3
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1
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5.6k
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Comment: Comment: Question on how to filter DESeq2 results correctly and use of the results functi
22 months ago by Papyrus ★ 3.0k
4
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1
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5.6k
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Answer: Answer: Question on how to filter DESeq2 results correctly and use of the results functi
22 months ago by Papyrus ★ 3.0k
1
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1
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6.9k
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Answer: Answer: How to create a dotplot like this for GSEA analysis from DNA methylation data (C
22 months ago by Papyrus ★ 3.0k
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0
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1.1k
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Comment: Comment: Animation of EnhancedVolcano?
2.0 years ago by Papyrus ★ 3.0k
1
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0
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791
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Comment: Comment: Resource for Enhancers for the gene X in different tissues
2.0 years ago by Papyrus ★ 3.0k
1
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1
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791
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Comment: Comment: Resource for Enhancers for the gene X in different tissues
2.0 years ago by Papyrus ★ 3.0k
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0
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1.5k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
2.0 years ago by Papyrus ★ 3.0k
1
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1
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1.5k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
2.0 years ago by Papyrus ★ 3.0k
1
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1
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1.5k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
2.0 years ago by Papyrus ★ 3.0k
4
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1
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2.4k
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Answer: Answer: GSEA with GO and KEGG datasets
2.0 years ago by Papyrus ★ 3.0k
2
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0
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2.8k
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Comment: Comment: Searching for a way to plot Seurat style equivalent dotplot for gene expression
2.0 years ago by Papyrus ★ 3.0k
0
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1
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974
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Comment: Comment: Issue with DESeq2 gene outlier detection when having multiple groups
2.2 years ago by Papyrus ★ 3.0k
1
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3
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974
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Issue with DESeq2 gene outlier detection when having multiple groups
DESeq2 R RNA-seq
updated 2.2 years ago by 20k • written 2.2 years ago by ★ 3.0k
1
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1
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862
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Answer: Answer: Why a gene in UCSC has different positions?
2.3 years ago by Papyrus ★ 3.0k
2
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1
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604
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Comment: Comment: differential expressed proteins cutoff threshold
2.3 years ago by Papyrus ★ 3.0k
1
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0
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732
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Answer: Answer: Reads vs library size for DEA
2.3 years ago by Papyrus ★ 3.0k
1
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1
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970
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Comment: Comment: What type of normalization does removeBatchEffect function require as the input?
2.3 years ago by Papyrus ★ 3.0k
0
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2
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1.1k
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Comment: Comment: How to identify epigenetic complexes and transcription factors targeting list of
2.4 years ago by Papyrus ★ 3.0k
0
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0
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1.2k
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Comment: Comment: How to avoid overfitting using SVA?
2.4 years ago by Papyrus ★ 3.0k
0
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0
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1.0k
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Comment: Comment: WGBS data presentation
2.5 years ago by Papyrus ★ 3.0k
0
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1
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2.2k
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Comment: Comment: Cluster Profiler- enrichGO
2.5 years ago by Papyrus ★ 3.0k
1
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0
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1.4k
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Comment: Comment: ChIP-seq; investigate binding within region of tRNA genes
2.6 years ago by Papyrus ★ 3.0k
1
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1
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1.4k
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Comment: Comment: ChIP-seq; investigate binding within region of tRNA genes
2.6 years ago by Papyrus ★ 3.0k
0
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0
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663
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Comment: Comment: CpG Island Related
2.6 years ago by Papyrus ★ 3.0k
1
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0
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586
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Comment: Comment: Help finding normal samples for DNA methylation on the 450K platform
2.7 years ago by Papyrus ★ 3.0k
0
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0
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5.4k
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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
2.7 years ago by Papyrus ★ 3.0k
5
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0
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1.2k
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Comment: Comment: My PCA plot looks good but i don't have differentially expressed genes
2.7 years ago by Papyrus ★ 3.0k
0
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1
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892
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Answer: Answer: About Per base sequence content: Should I cut the former abnormal 10 bp?
2.7 years ago by Papyrus ★ 3.0k
0
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1
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692
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Comment: Comment: from dexseq results to alternative splicing events identification
2.7 years ago by Papyrus ★ 3.0k
1
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0
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663
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Comment: Comment: reference request: list of DNA methylation sites with consistent methylation lev
2.8 years ago by Papyrus ★ 3.0k
3
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0
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1.2k
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Answer: Answer: TET2 Binding Motifs BED file
2.8 years ago by Papyrus ★ 3.0k
2
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1
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714
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Comment: Comment: find peaks over a set of genes
2.8 years ago by Papyrus ★ 3.0k
336 results • Page 2 of 7
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