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Comment: Comment: How do I create a loop for each unique genes to subset the GRanges objects only
2.8 years ago by Papyrus ★ 3.0k
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Comment: Comment: Tips and tricks to improve data visualization in bioinformatics
2.8 years ago by Papyrus ★ 3.0k
15
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Forum: Tips and tricks to improve data visualization in bioinformatics
visualization ggplot2 plot
updated 2.8 years ago by ★ 28k • written 2.8 years ago by ★ 3.0k
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Comment: Comment: Inconsistency between Microarray and RNA-Seq results (Both were performed in the
2.8 years ago by Papyrus ★ 3.0k
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1
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1.6k
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Comment: Comment: Usefulness of hypergeometric test in pathway enrichment analysis
2.8 years ago by Papyrus ★ 3.0k
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1
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1.6k
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Answer: Answer: Usefulness of hypergeometric test in pathway enrichment analysis
2.8 years ago by Papyrus ★ 3.0k
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1.7k
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Comment: Comment: plot in r with count on y and dates on x axis
2.8 years ago by Papyrus ★ 3.0k
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1
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1.2k
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Answer: Answer: Inconsistency between Microarray and RNA-Seq results (Both were performed in the
2.8 years ago by Papyrus ★ 3.0k
1
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1
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1.7k
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Comment: Comment: what are Differentially Expressed Genes?
2.9 years ago by Papyrus ★ 3.0k
4
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1.7k
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Answer: Answer: what are Differentially Expressed Genes?
2.9 years ago by Papyrus ★ 3.0k
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1.0k
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Answer: Answer: From where to get a comprehensive list of genes with gene start, gene end and ch
2.9 years ago by Papyrus ★ 3.0k
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1.5k
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Answer: Answer: calculate percentage of bases covered by the transcriptome
3.0 years ago by Papyrus ★ 3.0k
2
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0
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823
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Comment: Comment: Is there any online or offline venn diagram tool which could run with more than
3.0 years ago by Papyrus ★ 3.0k
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1
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1.8k
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Comment: Comment: Using normalised counts for pairwise gene correlation (pearson) across samples
3.0 years ago by Papyrus ★ 3.0k
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1
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2.0k
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Answer: Answer: filtering most variable genes
3.0 years ago by Papyrus ★ 3.0k
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1
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1.7k
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Comment: Comment: RNA-Seq and qPCR
3.0 years ago by Papyrus ★ 3.0k
2
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1
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1.7k
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Comment: Comment: RNA-Seq and qPCR
3.0 years ago by Papyrus ★ 3.0k
3
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1.7k
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Answer: Answer: RNA-Seq and qPCR
3.0 years ago by Papyrus ★ 3.0k
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1.3k
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Comment: Comment: Noob question: how to combine counts and DESeq data into one CSV?
3.0 years ago by Papyrus ★ 3.0k
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1.3k
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Answer: Answer: Noob question: how to combine counts and DESeq data into one CSV?
3.0 years ago by Papyrus ★ 3.0k
2
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1
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1.6k
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Answer: Answer: Heatmap for ChIP-seq data
3.1 years ago by Papyrus ★ 3.0k
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1.2k
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Comment: Comment: DNA methylation batch effect remove
3.1 years ago by Papyrus ★ 3.0k
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1
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2.8k
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Comment: Comment: ChIP-seq heatmap input bed file
3.1 years ago by Papyrus ★ 3.0k
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3.5k
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Comment: Comment: Batch effects prevention
3.1 years ago by Papyrus ★ 3.0k
3
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2
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2.8k
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Answer: Answer: ChIP-seq heatmap input bed file
3.1 years ago by Papyrus ★ 3.0k
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0
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1.7k
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Comment: Comment: Create custom annotation for Chinese hamster (Cricetulus griseus)
3.1 years ago by Papyrus ★ 3.0k
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1
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1.7k
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Comment: Comment: Create custom annotation for Chinese hamster (Cricetulus griseus)
3.1 years ago by Papyrus ★ 3.0k
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1
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1.7k
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Answer: Answer: Create custom annotation for Chinese hamster (Cricetulus griseus)
3.1 years ago by Papyrus ★ 3.0k
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1
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2.8k
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Answer: Answer: Problem in plotting graph or Graphics Device in the RStudio
3.1 years ago by Papyrus ★ 3.0k
0
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0
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1.1k
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Answer: Answer: How to do gene enrichment with locally stored KEGG & Reactome data in R
3.1 years ago by Papyrus ★ 3.0k
0
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0
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2.8k
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Comment: Comment: How to understand logics and statistical concepts behind limma package?
3.1 years ago by Papyrus ★ 3.0k
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0
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1.3k
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Comment: Comment: Why some CpGs start with "ch"
3.1 years ago by Papyrus ★ 3.0k
1
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1
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1.3k
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Answer: Answer: Why some CpGs start with "ch"
3.1 years ago by Papyrus ★ 3.0k
2
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0
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2.8k
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Answer: Answer: How to understand logics and statistical concepts behind limma package?
3.1 years ago by Papyrus ★ 3.0k
1
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0
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2.0k
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Comment: Comment: How to import a BED file to ChIPseeker in order to visualize genome coverage plo
3.1 years ago by Papyrus ★ 3.0k
3
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1
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2.0k
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Answer: Answer: How to import a BED file to ChIPseeker in order to visualize genome coverage plo
3.1 years ago by Papyrus ★ 3.0k
2
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0
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934
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Comment: Comment: Finding regulatory elements for coexpressed genes
3.2 years ago by Papyrus ★ 3.0k
2
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0
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3.7k
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Comment: Comment: Enrichr input genes, up, down, or both at once
3.2 years ago by Papyrus ★ 3.0k
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0
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837
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Answer: Answer: Filtering of RNA-seq data
3.2 years ago by Papyrus ★ 3.0k
3
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0
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1.6k
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Answer: Answer: proteomics data analysis and non-normality distribution
3.2 years ago by Papyrus ★ 3.0k
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0
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2.4k
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Comment: Comment: Color layer in ggplot (Volcano plot)
3.2 years ago by Papyrus ★ 3.0k
1
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1
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6.3k
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Comment: Comment: RNA-seq z-score normalization
3.2 years ago by Papyrus ★ 3.0k
2
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0
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923
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Answer: Answer: how to get the file of CG sites correspond to gene about Infinium MethylationEPI
3.2 years ago by Papyrus ★ 3.0k
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0
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1.4k
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Answer: Answer: Pick Random regions inside genes
3.2 years ago by Papyrus ★ 3.0k
2
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0
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980
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Answer: Answer: Per base sequence Quality in Fast QC report
3.2 years ago by Papyrus ★ 3.0k
1
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1
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2.5k
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Comment: Comment: How to use MACS2 output for DESEQ2 differential analysis during ATAC-seq? How to
3.2 years ago by Papyrus ★ 3.0k
1
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0
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2.0k
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Answer: Answer: Database for Enhancers with Coordinates
3.2 years ago by Papyrus ★ 3.0k
1
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1
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775
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Comment: Comment: microarray dataset input into metascape
3.2 years ago by Papyrus ★ 3.0k
1
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1
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1.5k
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Comment: Comment: Row names and probe names does not match in topTable output
3.2 years ago by Papyrus ★ 3.0k
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1
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1.5k
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Comment: Comment: Row names and probe names does not match in topTable output
3.2 years ago by Papyrus ★ 3.0k
336 results • Page 3 of 7
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