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3
votes
4
replies
493
views
Conceptual and statistical help in creating a synthetic RNAseq cohort from a real-world cohort of samples
statistics DESeq2 RNAseq
updated 13 days ago by 86k • written 16 days ago by ▴ 150
0
votes
1
reply
493
views
Comment: Comment: Conceptual and statistical help in creating a synthetic RNAseq cohort from a rea
15 days ago by K.patel5 ▴ 150
0
votes
2
replies
655
views
How to obtain Node/ Edge information from a Reactome Pathway
R API pathways reactome databases
updated 9 months ago by 148k • written 10 months ago by ▴ 150
0
votes
0
replies
655
views
Comment: Comment: How to obtain Node/ Edge information from a Reactome Pathway
10 months ago by K.patel5 ▴ 150
0
votes
0
replies
462
views
How to read count information from an old RGB based Agilent DNA array
CNV Agilent DNA WGS
17 months ago by K.patel5 ▴ 150
1
vote
0
replies
408
views
Can ART be used to generate a WES .sam file rather than a WGS file?
genomics biology WGS synthetic WES
2.2 years ago by K.patel5 ▴ 150
1
vote
5
replies
1.1k
views
Advice on how to generate synthetic Copy Number Variation data
CNV genomics biology synthetic WES
updated 2.2 years ago by ▴ 280 • written 2.2 years ago by ▴ 150
0
votes
0
replies
1.1k
views
Comment: Comment: Advice on how to generate synthetic Copy Number Variation data
2.2 years ago by K.patel5 ▴ 150
0
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1
reply
1.1k
views
Comment: Comment: Advice on how to generate synthetic Copy Number Variation data
2.2 years ago by K.patel5 ▴ 150
0
votes
0
replies
1.5k
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Comment: Comment: How to add transcript and cpg site information to a bed file
2.2 years ago by K.patel5 ▴ 150
0
votes
0
replies
1.5k
views
Comment: Comment: How to add transcript and cpg site information to a bed file
2.2 years ago by K.patel5 ▴ 150
0
votes
1
reply
1.2k
views
VEP/ CADD error - ERROR: Assembly is GRCh38 but CADD file does not contain GRCh38 in header.
CADD trio WES VEP
updated 19 months ago by ▴ 720 • written 2.3 years ago by ▴ 150
0
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1
reply
1.4k
views
Comment: Comment: Plot GSEA software results into R
2.7 years ago by K.patel5 ▴ 150
0
votes
0
replies
518
views
Comment: Comment: Dataset or repository to look for RNA seq datasets using ribosomal depletion for
2.7 years ago by K.patel5 ▴ 150
3
votes
4
replies
1.5k
views
How to add transcript and cpg site information to a bed file
genomics annotations cpg BED
2.2 years ago by K.patel5 ▴ 150
0
votes
0
replies
2.0k
views
Comment: Comment: How to pipe bcftools query to bcftools fill-tags
2.8 years ago by K.patel5 ▴ 150
2
votes
2
replies
2.0k
views
How to pipe bcftools query to bcftools fill-tags
BCFtools variant-calling genomics
updated 18 months ago by 44k • written 2.8 years ago by ▴ 150
0
votes
0
replies
562
views
Comment: Comment: miRNA-lncRNA interaction prediction
2.8 years ago by K.patel5 ▴ 150
0
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0
replies
962
views
Comment: Comment: RNAseq and future analysis
2.8 years ago by K.patel5 ▴ 150
0
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0
replies
1.2k
views
Comment: Comment: How to use BCFtools to keep variants if they are `DP > 10` in all samples?
2.9 years ago by K.patel5 ▴ 150
4
votes
3
replies
1.2k
views
How to use BCFtools to keep variants if they are `DP > 10` in all samples?
BCFtools variant-calling genomics
updated 18 months ago by 44k • written 2.9 years ago by ▴ 150
0
votes
1
reply
2.1k
views
Comment: Comment: Transcription factors database
2.9 years ago by K.patel5 ▴ 150
1
vote
0
replies
1.1k
views
Comment: Comment: Network Analysis - how to generate the edges and vertices dataset?
2.9 years ago by K.patel5 ▴ 150
0
votes
1
reply
2.7k
views
Comment: Comment: Biomart getLDS between two plant genomes does not work
2.9 years ago by K.patel5 ▴ 150
2
votes
0
replies
3.0k
views
Answer: Answer: Binary heatmap using R
2.9 years ago by K.patel5 ▴ 150
0
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1
reply
3.0k
views
Comment: Comment: Heatmap R
2.9 years ago by K.patel5 ▴ 150
1
vote
1
reply
2.5k
views
Comment: Comment: GATK4 - To be known or not to be known, that is the question.
2.9 years ago by K.patel5 ▴ 150
7
votes
3
replies
2.5k
views
GATK4 - To be known or not to be known, that is the question.
WGS WES flags GATK
updated 2.9 years ago by 5.8k • written 2.9 years ago by ▴ 150
0
votes
0
replies
1.7k
views
Comment: Comment: GATK4 -known-sites input Recalibrate Base Quality Scores
2.9 years ago by K.patel5 ▴ 150
2
votes
3
replies
2.2k
views
VEP - How to retrieve information from the INFO column of a vcf file neatly
tab vcf annotations VEP
updated 2.9 years ago by 12k • written 3.0 years ago by ▴ 150
0
votes
0
replies
2.2k
views
Comment: Comment: VEP - How to retrieve information from the INFO column of a vcf file neatly
3.0 years ago by K.patel5 ▴ 150
0
votes
0
replies
1.7k
views
Comment: Comment: Strangely too low P-value and Adjusted P-value(FDR) DESeq2 and edgeR
3.0 years ago by K.patel5 ▴ 150
0
votes
0
replies
4.7k
views
Comment: Comment: How to create specific .bed files for a panel of genes
3.0 years ago by K.patel5 ▴ 150
0
votes
0
replies
4.7k
views
Comment: Comment: How to create specific .bed files for a panel of genes
3.0 years ago by K.patel5 ▴ 150
7
votes
4
replies
4.7k
views
How to create specific .bed files for a panel of genes
panel genomics BED
3.0 years ago by K.patel5 ▴ 150
0
votes
0
replies
2.3k
views
Comment: Comment: Attempting to generate a bam.bai file but the output is not readable
3.0 years ago by K.patel5 ▴ 150
0
votes
1
reply
2.3k
views
Comment: Comment: Attempting to generate a bam.bai file but the output is not readable
3.0 years ago by K.patel5 ▴ 150
4
votes
4
replies
2.3k
views
Attempting to generate a bam.bai file but the output is not readable
exome samtools sequencing BAM
3.0 years ago by K.patel5 ▴ 150
3
votes
2
replies
1.2k
views
Is it necessary to test for multiple correction during differential expression analysis on microRNA data?
microRNA miRNA-seq differential expression stats
updated 3.9 years ago by 8.9k • written 3.9 years ago by ▴ 150
0
votes
1
reply
2.6k
views
Comment: C: How does miRdeep2 normalise sequences
4.0 years ago by K.patel5 ▴ 150
5
votes
6
replies
2.6k
views
How does miRdeep2 normalise sequences
miRNA sequencing miRDeep2
updated 3.3 years ago by ▴ 10 • written 4.0 years ago by ▴ 150
0
votes
0
replies
3.6k
views
Comment: C: Why do some gene set enrichment services do not ask for a background data set
4.8 years ago by K.patel5 ▴ 150
0
votes
1
reply
3.6k
views
Comment: C: Why do some gene set enrichment services do not ask for a background data set
4.9 years ago by K.patel5 ▴ 150
5
votes
4
replies
3.6k
views
Why do some gene set enrichment services do not ask for a background data set
enrichr panther GOrilla GSEA
4.9 years ago by K.patel5 ▴ 150
0
votes
0
replies
1.8k
views
Comment: C: Processing .raw files or out.tar files from Mass Spec
5.4 years ago by K.patel5 ▴ 150
1
vote
2
replies
1.8k
views
Processing .raw files or out.tar files from Mass Spec
mass spec R proteomics
5.4 years ago by K.patel5 ▴ 150
0
votes
1
reply
1.9k
views
Comment: C: fastq dump usage of microRNA-seq data
5.6 years ago by K.patel5 ▴ 150
0
votes
0
replies
1.9k
views
Comment: C: fastq dump usage of microRNA-seq data
5.6 years ago by K.patel5 ▴ 150
0
votes
0
replies
1.9k
views
Comment: C: fastq dump usage of microRNA-seq data
5.6 years ago by K.patel5 ▴ 150
7
votes
8
replies
1.9k
views
fastq dump usage of microRNA-seq data
RNA-Seq microRNA fastq
5.6 years ago by K.patel5 ▴ 150
51 results • Page 1 of 2
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