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364
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Merging Imputed VCF with Reference Panel VCF
VCF GLIMPSE Imputation
9 months ago by selplat21 ▴ 20
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0
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1.2k
views
Comment: Comment: Plotting LD heat map with plink.ld result
10 months ago by selplat21 ▴ 20
2
votes
2
replies
1.2k
views
Plotting LD heat map with plink.ld result
R
10 months ago by selplat21 ▴ 20
0
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1
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1.2k
views
Comment: Comment: Header too long for bam format
10 months ago by selplat21 ▴ 20
2
votes
3
replies
1.2k
views
Header too long for bam format
samtools alignments
updated 10 months ago by 45k • written 10 months ago by ▴ 20
0
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0
replies
1.2k
views
Comment: Comment: Download data from data dryad using CLI?
10 months ago by selplat21 ▴ 20
1
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3
replies
1.2k
views
Download data from data dryad using CLI?
datadryad
10 months ago by selplat21 ▴ 20
0
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1
reply
604
views
Comment: Comment: Bcftools consensus unexpected output
12 months ago by selplat21 ▴ 20
0
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3
replies
604
views
Bcftools consensus unexpected output
Bcftools
updated 12 months ago by 45k • written 12 months ago by ▴ 20
0
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0
replies
477
views
Bcftools consensus when reference is a deletion
consensus vcf
18 months ago by selplat21 ▴ 20
0
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0
replies
407
views
Bcftools Consensus - Choose Random Allele for Heterozygous Sites
bcftools
updated 20 months ago by 45k • written 20 months ago by ▴ 20
0
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0
replies
496
views
Sample based on allele frequency matching between two files
linkage
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 20
0
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0
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890
views
Comment: Comment: Removing or Setting pairs to NA based on conditions in another data frame (R)
2.9 years ago by selplat21 ▴ 20
3
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2
replies
890
views
Removing or Setting pairs to NA based on conditions in another data frame (R)
R
2.9 years ago by selplat21 ▴ 20
2
votes
2
replies
1.1k
views
Set random genotypes to missing in VCF file by individuals and sites
imputation
2.9 years ago by selplat21 ▴ 20
0
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0
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1.1k
views
Comment: Comment: Set random genotypes to missing in VCF file by individuals and sites
2.9 years ago by selplat21 ▴ 20
1
vote
5
replies
1.4k
views
Convert rows to columns delimited by each SNP ID
vcf linux bimbam
updated 2.9 years ago by 152k • written 2.9 years ago by ▴ 20
1
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0
replies
1.4k
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Answer: Answer: Convert rows to columns delimited by each SNP ID
updated 2.9 years ago by 152k • written 2.9 years ago by ▴ 20
0
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0
replies
1.4k
views
Comment: Comment: Convert rows to columns delimited by each SNP ID
2.9 years ago by selplat21 ▴ 20
0
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0
replies
1.4k
views
Comment: Comment: Convert rows to columns delimited by each SNP ID
2.9 years ago by selplat21 ▴ 20
0
votes
1
reply
1.4k
views
Comment: Comment: Convert rows to columns delimited by each SNP ID
2.9 years ago by selplat21 ▴ 20
1
vote
2
replies
766
views
Extract Reads with Allele Type in IGV
Genomics alignment
updated 2.5 years ago by 45k • written 3.3 years ago by ▴ 20
0
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0
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766
views
Comment: Comment: Extract Reads with Allele Type in IGV
3.3 years ago by selplat21 ▴ 20
0
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1
reply
979
views
Comment: Comment: Add Chromosome Breaks and Labels to Continuous x-axis in R
3.4 years ago by selplat21 ▴ 20
1
vote
3
replies
979
views
Add Chromosome Breaks and Labels to Continuous x-axis in R
R
updated 3.4 years ago by 12k • written 3.4 years ago by ▴ 20
0
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0
replies
1.0k
views
Comment: Comment: Loop for interval range based on chromosome sizes
3.4 years ago by selplat21 ▴ 20
2
votes
1
reply
731
views
Filter VCF file by list of sites.
vcf filtering genomics
updated 3.4 years ago by 166k • written 3.4 years ago by ▴ 20
0
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0
replies
1.0k
views
Comment: Comment: Loop for interval range based on chromosome sizes
3.4 years ago by selplat21 ▴ 20
0
votes
3
replies
1.0k
views
Loop for interval range based on chromosome sizes
chromosomes genomics
updated 2.4 years ago by 45k • written 3.4 years ago by ▴ 20
0
votes
0
replies
834
views
Modifying Genbank Contamination File for Bedtools
Genome-Assembly Linux
updated 3.8 years ago by 45k • written 3.9 years ago by ▴ 20
1
vote
1
reply
751
views
For loop to generate mean for each measurement by sex
R
updated 2.2 years ago by 45k • written 4.5 years ago by ▴ 20
0
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0
replies
1.2k
views
Comment: C: Linear Model Loop in R
4.6 years ago by selplat21 ▴ 20
1
vote
6
replies
1.2k
views
Linear Model Loop in R
R
updated 2.1 years ago by 45k • written 4.6 years ago by ▴ 20
0
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0
replies
1.2k
views
Comment: C: Linear Model Loop in R
4.6 years ago by selplat21 ▴ 20
0
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0
replies
1.2k
views
Comment: C: Linear Model Loop in R
4.6 years ago by selplat21 ▴ 20
1
vote
1
reply
972
views
Imputation on low coverage samples
next-gen popgen imputation sequencing
4.6 years ago by selplat21 ▴ 20
1
vote
3
replies
1.1k
views
Summing Chromosome Sizes
R sequencing
updated 4.6 years ago by 13k • written 4.6 years ago by ▴ 20
0
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0
replies
1.1k
views
Comment: C: Summing Chromosome Sizes
4.6 years ago by selplat21 ▴ 20
0
votes
0
replies
1.4k
views
RepeatModeler - Everything works except LTR Harvest
assembly genome next-gen sequencing
4.6 years ago by selplat21 ▴ 20
0
votes
0
replies
1.2k
views
Comment: C: Making disjoint chromosomal sites contiguous with awk
4.7 years ago by selplat21 ▴ 20
0
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1
reply
1.2k
views
Comment: C: Making disjoint chromosomal sites contiguous with awk
4.7 years ago by selplat21 ▴ 20
0
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1
reply
1.2k
views
Comment: A: Making disjoint chromosomal sites contiguous with awk
4.7 years ago by selplat21 ▴ 20
0
votes
5
replies
1.2k
views
Making disjoint chromosomal sites contiguous with awk
awk assembly bash sequence
updated 2.1 years ago by 45k • written 4.7 years ago by ▴ 20
1
vote
9
replies
3.1k
views
Concatenation and Gzip Compression of Beagle Files Slow
sequencing next-gen unix bash
updated 4.8 years ago by 20 • written 4.8 years ago by ▴ 20
0
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1
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3.1k
views
Comment: C: Concatenation and Gzip Compression of Beagle Files Slow
4.8 years ago by selplat21 ▴ 20
0
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1
reply
3.1k
views
Comment: C: Concatenation and Gzip Compression of Beagle Files Slow
4.8 years ago by selplat21 ▴ 20
0
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1
reply
3.1k
views
Comment: C: Concatenation and Gzip Compression of Beagle Files Slow
4.8 years ago by selplat21 ▴ 20
1
vote
6
replies
1.5k
views
Print based on character strings
R Command Line Unix
4.8 years ago by selplat21 ▴ 20
0
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1
reply
1.5k
views
Comment: A: Print based on character strings
4.8 years ago by selplat21 ▴ 20
0
votes
1
reply
1.5k
views
Comment: C: Print based on character strings
4.8 years ago by selplat21 ▴ 20
75 results • Page 1 of 2
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