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0
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0
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243
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Merging Imputed VCF with Reference Panel VCF
VCF GLIMPSE Imputation
9 weeks ago by selplat21 ▴ 20
0
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0
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566
views
Comment: Comment: Plotting LD heat map with plink.ld result
3 months ago by selplat21 ▴ 20
2
votes
2
replies
566
views
Plotting LD heat map with plink.ld result
R
3 months ago by selplat21 ▴ 20
0
votes
1
reply
408
views
Comment: Comment: Header too long for bam format
3 months ago by selplat21 ▴ 20
2
votes
3
replies
408
views
Header too long for bam format
samtools alignments
updated 3 months ago by 44k • written 3 months ago by ▴ 20
0
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0
replies
493
views
Comment: Comment: Download data from data dryad using CLI?
4 months ago by selplat21 ▴ 20
1
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3
replies
493
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Download data from data dryad using CLI?
datadryad
4 months ago by selplat21 ▴ 20
0
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1
reply
374
views
Comment: Comment: Bcftools consensus unexpected output
5 months ago by selplat21 ▴ 20
0
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3
replies
374
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Bcftools consensus unexpected output
Bcftools
updated 5 months ago by 44k • written 5 months ago by ▴ 20
0
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0
replies
365
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Bcftools consensus when reference is a deletion
consensus vcf
12 months ago by selplat21 ▴ 20
0
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0
replies
324
views
Bcftools Consensus - Choose Random Allele for Heterozygous Sites
bcftools
updated 13 months ago by 44k • written 13 months ago by ▴ 20
0
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0
replies
417
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Sample based on allele frequency matching between two files
linkage
updated 18 months ago by 44k • written 18 months ago by ▴ 20
0
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0
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725
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Comment: Comment: Removing or Setting pairs to NA based on conditions in another data frame (R)
2.3 years ago by selplat21 ▴ 20
3
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2
replies
725
views
Removing or Setting pairs to NA based on conditions in another data frame (R)
R
2.3 years ago by selplat21 ▴ 20
2
votes
2
replies
889
views
Set random genotypes to missing in VCF file by individuals and sites
imputation
2.4 years ago by selplat21 ▴ 20
0
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0
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889
views
Comment: Comment: Set random genotypes to missing in VCF file by individuals and sites
2.4 years ago by selplat21 ▴ 20
1
vote
5
replies
1.2k
views
Convert rows to columns delimited by each SNP ID
vcf linux bimbam
updated 2.4 years ago by 147k • written 2.4 years ago by ▴ 20
1
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0
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1.2k
views
Answer: Answer: Convert rows to columns delimited by each SNP ID
updated 2.4 years ago by 147k • written 2.4 years ago by ▴ 20
0
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0
replies
1.2k
views
Comment: Comment: Convert rows to columns delimited by each SNP ID
2.4 years ago by selplat21 ▴ 20
0
votes
0
replies
1.2k
views
Comment: Comment: Convert rows to columns delimited by each SNP ID
2.4 years ago by selplat21 ▴ 20
0
votes
1
reply
1.2k
views
Comment: Comment: Convert rows to columns delimited by each SNP ID
2.4 years ago by selplat21 ▴ 20
1
vote
2
replies
641
views
Extract Reads with Allele Type in IGV
Genomics alignment
updated 23 months ago by 44k • written 2.7 years ago by ▴ 20
0
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0
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641
views
Comment: Comment: Extract Reads with Allele Type in IGV
2.7 years ago by selplat21 ▴ 20
0
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1
reply
850
views
Comment: Comment: Add Chromosome Breaks and Labels to Continuous x-axis in R
2.8 years ago by selplat21 ▴ 20
1
vote
3
replies
850
views
Add Chromosome Breaks and Labels to Continuous x-axis in R
R
updated 2.8 years ago by 12k • written 2.8 years ago by ▴ 20
0
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0
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874
views
Comment: Comment: Loop for interval range based on chromosome sizes
2.9 years ago by selplat21 ▴ 20
2
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1
reply
619
views
Filter VCF file by list of sites.
vcf filtering genomics
updated 2.9 years ago by 164k • written 2.9 years ago by ▴ 20
0
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0
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874
views
Comment: Comment: Loop for interval range based on chromosome sizes
2.9 years ago by selplat21 ▴ 20
0
votes
3
replies
874
views
Loop for interval range based on chromosome sizes
chromosomes genomics
updated 21 months ago by 44k • written 2.9 years ago by ▴ 20
0
votes
0
replies
700
views
Modifying Genbank Contamination File for Bedtools
Genome-Assembly Linux
updated 3.3 years ago by 44k • written 3.4 years ago by ▴ 20
1
vote
1
reply
658
views
For loop to generate mean for each measurement by sex
R
updated 20 months ago by 44k • written 4.0 years ago by ▴ 20
0
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0
replies
1.0k
views
Comment: C: Linear Model Loop in R
4.0 years ago by selplat21 ▴ 20
1
vote
6
replies
1.0k
views
Linear Model Loop in R
R
updated 18 months ago by 44k • written 4.0 years ago by ▴ 20
0
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0
replies
1.0k
views
Comment: C: Linear Model Loop in R
4.0 years ago by selplat21 ▴ 20
0
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0
replies
1.0k
views
Comment: C: Linear Model Loop in R
4.0 years ago by selplat21 ▴ 20
1
vote
1
reply
837
views
Imputation on low coverage samples
next-gen popgen imputation sequencing
4.1 years ago by selplat21 ▴ 20
1
vote
3
replies
935
views
Summing Chromosome Sizes
R sequencing
updated 4.1 years ago by 13k • written 4.1 years ago by ▴ 20
0
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0
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935
views
Comment: C: Summing Chromosome Sizes
4.1 years ago by selplat21 ▴ 20
0
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0
replies
1.3k
views
RepeatModeler - Everything works except LTR Harvest
assembly genome next-gen sequencing
4.1 years ago by selplat21 ▴ 20
0
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0
replies
982
views
Comment: C: Making disjoint chromosomal sites contiguous with awk
4.1 years ago by selplat21 ▴ 20
0
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1
reply
982
views
Comment: C: Making disjoint chromosomal sites contiguous with awk
4.1 years ago by selplat21 ▴ 20
0
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1
reply
982
views
Comment: A: Making disjoint chromosomal sites contiguous with awk
4.1 years ago by selplat21 ▴ 20
0
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5
replies
982
views
Making disjoint chromosomal sites contiguous with awk
awk assembly bash sequence
updated 18 months ago by 44k • written 4.1 years ago by ▴ 20
1
vote
9
replies
2.4k
views
Concatenation and Gzip Compression of Beagle Files Slow
sequencing next-gen unix bash
updated 4.2 years ago by 20 • written 4.3 years ago by ▴ 20
0
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1
reply
2.4k
views
Comment: C: Concatenation and Gzip Compression of Beagle Files Slow
4.3 years ago by selplat21 ▴ 20
0
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1
reply
2.4k
views
Comment: C: Concatenation and Gzip Compression of Beagle Files Slow
4.3 years ago by selplat21 ▴ 20
0
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1
reply
2.4k
views
Comment: C: Concatenation and Gzip Compression of Beagle Files Slow
4.3 years ago by selplat21 ▴ 20
0
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1
reply
1.2k
views
Comment: A: Print based on character strings
4.3 years ago by selplat21 ▴ 20
1
vote
6
replies
1.2k
views
Print based on character strings
R Command Line Unix
4.3 years ago by selplat21 ▴ 20
0
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1
reply
1.2k
views
Comment: C: Print based on character strings
4.3 years ago by selplat21 ▴ 20
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