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11
votes
6
replies
21k
views
6 follow
Remove cells from Seurat based on a list
scRNA-seq Seurat
updated 16 months ago by 44k • written 4.5 years ago by ▴ 260
1
vote
1
reply
2.5k
views
Seurat: (Box)plot unscaled gene expression of a list of genes by cluster
Seurat R cell single
updated 2.5 years ago by ★ 1.8k • written 2.5 years ago by ▴ 260
7
votes
4
replies
1.4k
views
How to distinguish INDELs from SNPs.
WGS WES
updated 3.0 years ago by 14k • written 3.0 years ago by ▴ 260
0
votes
0
replies
1.4k
views
Comment: Comment: How to distinguish INDELs from SNPs.
3.0 years ago by elb ▴ 260
1
vote
0
replies
662
views
Pairwise batch correction in Monocle3
single cell correction batch Monocle3 trajectories
3.1 years ago by elb ▴ 260
0
votes
0
replies
1.1k
views
Comment: Comment: Plot average expression instead of -Log10(FDR/p-val) in volcano plot
3.2 years ago by elb ▴ 260
4
votes
2
replies
1.1k
views
Plot average expression instead of -Log10(FDR/p-val) in volcano plot
plot volcano expression gene
3.2 years ago by elb ▴ 260
0
votes
0
replies
820
views
Comment: Comment: Batch correction on scRNA-Seq data
3.5 years ago by elb ▴ 260
1
vote
2
replies
820
views
Batch correction on scRNA-Seq data
scRNA-Seq
3.5 years ago by elb ▴ 260
6
votes
4
replies
1.9k
views
merge .fastq.gz files
RNA-seq
updated 3.6 years ago by 14k • written 3.6 years ago by ▴ 260
0
votes
0
replies
1.9k
views
Comment: Comment: merge .fastq.gz files
3.6 years ago by elb ▴ 260
0
votes
1
reply
970
views
Comment: C: Combine two independent Seurat analysis into a single one
3.7 years ago by elb ▴ 260
2
votes
3
replies
970
views
Combine two independent Seurat analysis into a single one
RNA-Seq seurat
updated 3.7 years ago by 44k • written 3.7 years ago by ▴ 260
0
votes
0
replies
1.5k
views
Comment: C: Forward and reverse single cell data analysis
3.7 years ago by elb ▴ 260
8
votes
10
replies
1.5k
views
Forward and reverse single cell data analysis
RNA-Seq
updated 3.7 years ago by 14k • written 3.7 years ago by ▴ 260
0
votes
1
reply
5.5k
views
Comment: C: Normalization and batch effects correction in RNA-Seq data
4.2 years ago by elb ▴ 260
8
votes
4
replies
5.5k
views
Normalization and batch effects correction in RNA-Seq data
RNA-Seq Combat
updated 4.2 years ago by 13k • written 4.2 years ago by ▴ 260
1
vote
0
replies
693
views
Comment: C: Survival time computation
4.4 years ago by elb ▴ 260
3
votes
2
replies
693
views
Survival time computation
survival
4.4 years ago by elb ▴ 260
0
votes
0
replies
21k
views
Comment: C: Remove cells from Seurat based on a list
4.5 years ago by elb ▴ 260
0
votes
0
replies
21k
views
Comment: A: Remove cells from Seurat based on a list
4.5 years ago by elb ▴ 260
2
votes
2
replies
751
views
Annotate a list of RefSeqIDs
genome
updated 4.5 years ago by 147k • written 4.5 years ago by ▴ 260
0
votes
0
replies
1.2k
views
Comment: C: Annotation of acetylation ChIP-seq peaks to the nearest gene and reads cont
4.5 years ago by elb ▴ 260
0
votes
1
reply
1.2k
views
Comment: C: Annotation of acetylation ChIP-seq peaks to the nearest gene and reads cont
4.5 years ago by elb ▴ 260
2
votes
4
replies
1.2k
views
Annotation of acetylation ChIP-seq peaks to the nearest gene and reads cont
ChIP-Seq
4.5 years ago by elb ▴ 260
0
votes
0
replies
1.5k
views
Comment: C: Get the count.matrix from Chip-Seq BAM files
4.6 years ago by elb ▴ 260
0
votes
1
reply
1.5k
views
Comment: C: Get the count.matrix from Chip-Seq BAM files
4.6 years ago by elb ▴ 260
2
votes
4
replies
1.5k
views
Get the count.matrix from Chip-Seq BAM files
ChIP-Seq
updated 4.6 years ago by 85k • written 4.6 years ago by ▴ 260
0
votes
0
replies
1.2k
views
Comment: C: Looping bedtools multicov on paired bam and bed files
4.6 years ago by elb ▴ 260
3
votes
2
replies
1.2k
views
Looping bedtools multicov on paired bam and bed files
ChIP-Seq bedtools
updated 4.6 years ago by 85k • written 4.6 years ago by ▴ 260
0
votes
0
replies
4.4k
views
Comment: C: Filtering the genes based on cpm in edgeR
4.6 years ago by elb ▴ 260
2
votes
5
replies
4.4k
views
Filtering the genes based on cpm in edgeR
RNA-Seq edgeR
4.6 years ago by elb ▴ 260
0
votes
1
reply
4.4k
views
Comment: C: Filtering the genes based on cpm in edgeR
4.6 years ago by elb ▴ 260
0
votes
1
reply
3.2k
views
Comment: C: Extract quality scores from aligned BAM files
4.6 years ago by elb ▴ 260
3
votes
4
replies
3.2k
views
Extract quality scores from aligned BAM files
ChIP-Seq
4.6 years ago by elb ▴ 260
0
votes
0
replies
2.3k
views
Comment: C: Average insert size and standard deviation among R1 and R2 scRNA-seq 10X
4.9 years ago by elb ▴ 260
0
votes
1
reply
2.3k
views
Comment: C: Average insert size and standard deviation among R1 and R2 scRNA-seq 10X
4.9 years ago by elb ▴ 260
3
votes
5
replies
2.3k
views
Average insert size and standard deviation among R1 and R2 scRNA-seq 10X
RNA-Seq scRNA-Seq sequencing
updated 4.9 years ago by 147k • written 4.9 years ago by ▴ 260
1
vote
0
replies
893
views
chromHMM segmented genome annotation for genes
ChIP-Seq
4.9 years ago by elb ▴ 260
0
votes
0
replies
3.2k
views
Comment: C: Chip-seq best practice data analysis
5.1 years ago by elb ▴ 260
0
votes
1
reply
3.2k
views
Comment: C: Chip-seq best practice data analysis
5.1 years ago by elb ▴ 260
5
votes
7
replies
3.2k
views
Chip-seq best practice data analysis
ChIP-Seq
updated 5.1 years ago by 85k • written 5.1 years ago by ▴ 260
0
votes
0
replies
3.2k
views
Comment: C: Chip-seq best practice data analysis
5.1 years ago by elb ▴ 260
0
votes
0
replies
623
views
segmentation of Chip-exo DATA
ChIP-Seq
updated 5.1 years ago by 147k • written 5.1 years ago by ▴ 260
0
votes
0
replies
1.9k
views
Comment: C: Variability explained by a core of genes
5.2 years ago by elb ▴ 260
0
votes
1
reply
1.9k
views
Comment: C: Variability explained by a core of genes
5.2 years ago by elb ▴ 260
0
votes
1
reply
1.9k
views
Comment: C: Variability explained by a core of genes
5.2 years ago by elb ▴ 260
0
votes
0
replies
1.9k
views
Comment: C: Variability explained by a core of genes
5.2 years ago by elb ▴ 260
0
votes
1
reply
1.9k
views
Comment: C: Variability explained by a core of genes
5.2 years ago by elb ▴ 260
10
votes
12
replies
1.9k
views
Variability explained by a core of genes
RNA-Seq gene expression threshold variability
updated 5.2 years ago by 88k • written 5.2 years ago by ▴ 260
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