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Comment: Comment: GSEA and genes with 0 TPM's
23 months ago by Sandeep ▴ 260
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Answer: A: NGS pipelines @ free of cost
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 260
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Answer: A: Gallery: Computational tools for DNA methylation
updated 5.6 years ago by 45k • written 9.6 years ago by ▴ 260
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Answer: A: Survey: Your top 5 user-friendly bioinformatics learning and research tools and
updated 5.6 years ago by 45k • written 9.7 years ago by ▴ 260
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5.9k
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Comment: C: Snps Location Annotations
updated 5.7 years ago by 45k • written 9.5 years ago by ▴ 260
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5.5k
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Comment: C: Align short reads to multiple reference sequence
updated 5.7 years ago by 45k • written 10.9 years ago by ▴ 260
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4.2k
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Comment: C: VarScan.v2.4.3 generating incomplete or partial VCF file
5.9 years ago by Sandeep ▴ 260
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4.2k
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Comment: C: VarScan.v2.4.3 generating incomplete or partial VCF file
5.9 years ago by Sandeep ▴ 260
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1
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4.2k
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Comment: C: VarScan.v2.4.3 generating incomplete or partial VCF file
5.9 years ago by Sandeep ▴ 260
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1
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4.2k
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Comment: C: VarScan.v2.4.3 generating incomplete or partial VCF file
5.9 years ago by Sandeep ▴ 260
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1
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4.2k
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Comment: C: VarScan.v2.4.3 generating incomplete or partial VCF file
5.9 years ago by Sandeep ▴ 260
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1
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4.2k
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Comment: C: VarScan.v2.4.3 generating incomplete or partial VCF file
5.9 years ago by Sandeep ▴ 260
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4.2k
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Comment: C: VarScan.v2.4.3 generating incomplete or partial VCF file
5.9 years ago by Sandeep ▴ 260
0
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1
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4.2k
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Comment: C: VarScan.v2.4.3 generating incomplete or partial VCF file
5.9 years ago by Sandeep ▴ 260
0
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1
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4.2k
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Comment: C: VarScan.v2.4.3 generating incomplete or partial VCF file
5.9 years ago by Sandeep ▴ 260
0
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1
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4.2k
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Comment: C: VarScan.v2.4.3 generating incomplete or partial VCF file
5.9 years ago by Sandeep ▴ 260
1
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18
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4.2k
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VarScan.v2.4.3 generating incomplete or partial VCF file
SNP variant calling exomeSeq varscan
updated 5.9 years ago by ▴ 350 • written 5.9 years ago by ▴ 260
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1
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1.7k
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Are there any tools that can extract somatic variants from matched normal tumor vcf files?
DNA-seq variant calling ngs
updated 5.9 years ago by 89k • written 5.9 years ago by ▴ 260
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Comment: C: Is it possible to extract somatic variants from paired VCF files?
5.9 years ago by Sandeep ▴ 260
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2.9k
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Comment: C: GTF file for Bombyx Mori
7.0 years ago by Sandeep ▴ 260
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1
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2.9k
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Comment: C: GTF file for Bombyx Mori
7.0 years ago by Sandeep ▴ 260
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2.9k
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Comment: C: GTF file for Bombyx Mori
7.0 years ago by Sandeep ▴ 260
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2.9k
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Comment: C: GTF file for Bombyx Mori
7.0 years ago by Sandeep ▴ 260
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2.9k
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Comment: C: GTF file for Bombyx Mori
7.0 years ago by Sandeep ▴ 260
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10
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2.9k
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GTF file for Bombyx Mori
miRNA small RNA bombyx mori smallrna seq
updated 7.0 years ago by ★ 3.3k • written 7.0 years ago by ▴ 260
2
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7
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3.7k
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CNV analysis for targeted genomic region
CNV
updated 2.0 years ago by 45k • written 9.2 years ago by ▴ 260
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1.7k
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Comment: C: how to find a micro RNA in a mature RNA?
9.0 years ago by Sandeep ▴ 260
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0
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3.5k
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Answer: A: uploading files to the UCSC
9.0 years ago by Sandeep ▴ 260
0
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1
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2.7k
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Answer: A: Allele specific expression (ASE) using TPM (transcripts per million) values
9.0 years ago by Sandeep ▴ 260
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5.4k
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Answer: A: How to get adapter information from SRA dump FASTQ file??
9.0 years ago by Sandeep ▴ 260
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17k
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Comment: C: Annotating bed file with gene names
9.2 years ago by Sandeep ▴ 260
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4.3k
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Answer: A: What kinds of custom GTF/GFF/FASTA files should Ensembl provide?
9.2 years ago by Sandeep ▴ 260
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1
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5.0k
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Answer: A: Align RNASeq reads to combined genomes
9.2 years ago by Sandeep ▴ 260
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2.3k
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Answer: A: Why cnvkit run with output error
9.2 years ago by Sandeep ▴ 260
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2.1k
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Comment: C: Building a large-memory system for assembly and NGS analysis
9.2 years ago by Sandeep ▴ 260
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3.7k
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Comment: C: CNV analysis for targeted genomic region
9.2 years ago by Sandeep ▴ 260
0
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1
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3.7k
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Comment: C: CNV analysis for targeted genomic region
9.2 years ago by Sandeep ▴ 260
0
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0
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3.7k
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Comment: C: CNV analysis for targeted genomic region
9.2 years ago by Sandeep ▴ 260
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0
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4.1k
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Comment: C: Whole genome coordinates of promoters/gene regulatory elements
9.5 years ago by Sandeep ▴ 260
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2.3k
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Answer: A: Ovarian cancer & Gene Expression
9.5 years ago by Sandeep ▴ 260
2
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10
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4.7k
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Align short reads to large multi reference genome
bowtie ebwtl
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 260
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0
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4.1k
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Comment: C: Best way to perform single-cell RNA-seq normalization
9.7 years ago by Sandeep ▴ 260
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1
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4.1k
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Comment: C: Best way to perform single-cell RNA-seq normalization
9.7 years ago by Sandeep ▴ 260
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3.1k
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Comment: C: Digital Expression Explorer
9.7 years ago by Sandeep ▴ 260
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5
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6.3k
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Which Tool Is Used To Plot The Ideogram Shown Here?
updated 9.7 years ago by 20 • written 12.1 years ago by ▴ 260
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3
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3.0k
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Comment: C: Why is the scaling factor always million while dealing with RNA-Seq expression?
9.8 years ago by Sandeep ▴ 260
3
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6
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3.0k
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Why is the scaling factor always million while dealing with RNA-Seq expression?
RPKM TPM FPKM RNA-Seq CPM
updated 2.8 years ago by 45k • written 9.8 years ago by ▴ 260
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0
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4.7k
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Comment: C: Align short reads to large multi reference genome
9.9 years ago by Sandeep ▴ 260
0
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0
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3.9k
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Comment: Comment: How to get Allele Coverage from bam file or vcf file?
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 260
0
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0
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4.7k
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Comment: C: Align short reads to large multi reference genome
9.9 years ago by Sandeep ▴ 260
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