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Comment: Comment: Run mutltiple Fastq files on Hisat2
5 months ago by xiaoleiusc ▴ 140
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0
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7.5k
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Comment: Comment: How to generate sequence length distribution from Fasta file
6 months ago by xiaoleiusc ▴ 140
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1
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7.5k
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Comment: Comment: How to generate sequence length distribution from Fasta file
6 months ago by xiaoleiusc ▴ 140
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5
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2.1k
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Is there a way to install Python version 2 on Mac with M3 chips?
NGS Python
updated 9 months ago by ▴ 120 • written 9 months ago by ▴ 140
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0
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2.1k
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Answer: Answer: Is there a way to install Python version 2 on Mac with M3 chips?
updated 9 months ago by 150k • written 9 months ago by ▴ 140
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2
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2.1k
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Comment: Comment: Is there a way to install Python version 2 on Mac with M3 chips?
9 months ago by xiaoleiusc ▴ 140
0
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0
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2.8k
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Comment: Comment: GTF file for HIV strain pNL4-3
13 months ago by xiaoleiusc ▴ 140
1
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4
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853
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How can I get the sequences of the first 20nt of introns and the last 250nt of introns of hg38 genome?
annotation RNA
updated 13 months ago by 9.2k • written 13 months ago by ▴ 140
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1
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15k
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Comment: Comment: Repeat masker bed file
13 months ago by xiaoleiusc ▴ 140
0
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1
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853
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Comment: Comment: How can I get the sequences of the first 20nt of introns and the last 250nt of i
13 months ago by xiaoleiusc ▴ 140
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0
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13k
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Comment: Comment: cutadapt for trimming reads to specific length
13 months ago by xiaoleiusc ▴ 140
0
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0
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13k
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Comment: Comment: cutadapt for trimming reads to specific length
13 months ago by xiaoleiusc ▴ 140
0
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0
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21k
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Comment: Comment: Downloading gtf file for RefSeq
15 months ago by xiaoleiusc ▴ 140
1
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0
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1.3k
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Comment: Comment: Error message in Standalone BLAST
15 months ago by xiaoleiusc ▴ 140
0
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0
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1.2k
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Answer: Answer: IGV RNAseq- Splice junction
15 months ago by xiaoleiusc ▴ 140
0
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0
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3.9k
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Comment: Comment: "Valid" names for paired-end reads
15 months ago by xiaoleiusc ▴ 140
9
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6
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1.7k
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Search a read by its name in a big fastq.gz file
NGS fastq
updated 15 months ago by 45k • written 15 months ago by ▴ 140
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0
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2.0k
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Comment: Comment: Bowtie2 end-to-end versus local alignment for small RNAseq
15 months ago by xiaoleiusc ▴ 140
1
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0
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1.7k
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Comment: Comment: Search a read by its name in a big fastq.gz file
15 months ago by xiaoleiusc ▴ 140
0
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0
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20k
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Comment: Comment: Running STAR aligner on paired-end reads as single-end read
15 months ago by xiaoleiusc ▴ 140
0
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1
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1.7k
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Comment: Comment: Search a read by its name in a big fastq.gz file
15 months ago by xiaoleiusc ▴ 140
0
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1
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4.2k
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Comment: Comment: Should I remove Kmers identified in FastQC?
16 months ago by xiaoleiusc ▴ 140
0
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0
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4.4k
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Comment: Comment: Chimeric alignment with minimap2
17 months ago by xiaoleiusc ▴ 140
0
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1
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1.3k
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Comment: Comment: Error message in Standalone BLAST
17 months ago by xiaoleiusc ▴ 140
0
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0
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8.8k
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Comment: Comment: Are XA: tagged reads == SA: tagged BWAMEM aligned reads?
17 months ago by xiaoleiusc ▴ 140
0
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0
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2.0k
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Comment: Comment: Star alignment - AS and MD tags
17 months ago by xiaoleiusc ▴ 140
0
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2
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6.1k
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Comment: Comment: Is trimming necessary for RNAseq?
17 months ago by xiaoleiusc ▴ 140
0
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0
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7.8k
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Comment: Comment: SE reads in fr-firststrand, fr-secondstrand
17 months ago by xiaoleiusc ▴ 140
2
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1
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785
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are transcripts in the Ensembl transcript release of human from certain cell types?
annotation RNA-seq
updated 20 months ago by ▴ 560 • written 20 months ago by ▴ 140
0
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0
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728
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Comment: Comment: multi-mapping reads settings in Rsubread or Rsubjunc
22 months ago by xiaoleiusc ▴ 140
1
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2
replies
728
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multi-mapping reads settings in Rsubread or Rsubjunc
Rsubjunc RNA-seq
22 months ago by xiaoleiusc ▴ 140
1
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0
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5.9k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.1 years ago by xiaoleiusc ▴ 140
0
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1
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5.9k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.2 years ago by xiaoleiusc ▴ 140
0
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1
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5.9k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.7 years ago by xiaoleiusc ▴ 140
0
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0
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2.1k
views
Answer: Answer: Fastq reads mapped to the desired position on reference genome
updated 2.4 years ago by 45k • written 3.0 years ago by ▴ 140
0
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0
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1.8k
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Comment: Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
3.4 years ago by xiaoleiusc ▴ 140
0
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1
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1.8k
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Comment: Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
3.4 years ago by xiaoleiusc ▴ 140
1
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5
replies
1.8k
views
Find a human mRNA transcript with specific dinucleotide frequencies close to user input values
Python RNA-seq R
updated 2.2 years ago by 45k • written 3.4 years ago by ▴ 140
0
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0
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6.7k
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Comment: Comment: How To Join Text Files By A Certain Column (Accession Id)
3.4 years ago by xiaoleiusc ▴ 140
1
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1
reply
5.9k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.4 years ago by xiaoleiusc ▴ 140
0
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1
reply
5.9k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.4 years ago by xiaoleiusc ▴ 140
0
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1
reply
5.9k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.4 years ago by xiaoleiusc ▴ 140
0
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1
reply
5.9k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.4 years ago by xiaoleiusc ▴ 140
0
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1
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68k
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Comment: Comment: Insert Size And Fragment Size ?
3.4 years ago by xiaoleiusc ▴ 140
1
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1
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2.2k
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Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
3.4 years ago by xiaoleiusc ▴ 140
0
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1
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27k
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Comment: Comment: Check if BAM is derived from pair-end or single-end reads?
3.4 years ago by xiaoleiusc ▴ 140
0
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1
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2.2k
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Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
3.4 years ago by xiaoleiusc ▴ 140
2
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6
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2.2k
views
calculate nucleotides frequencies from mapped reads in a BAM file
RNA-seq
updated 3.4 years ago by 9.0k • written 3.4 years ago by ▴ 140
1
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0
replies
697
views
Is there a public database where I could download mRNA seq (transcriptome) data of 293T cells
RNA-seq Database Public
3.4 years ago by xiaoleiusc ▴ 140
0
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0
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18k
views
Comment: Comment: How to work out Z score for heatmaps for RNA seq dataset
3.5 years ago by xiaoleiusc ▴ 140
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