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Comment: Comment: Run mutltiple Fastq files on Hisat2
5 weeks ago by xiaoleiusc ▴ 140
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0
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6.9k
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Comment: Comment: How to generate sequence length distribution from Fasta file
11 weeks ago by xiaoleiusc ▴ 140
0
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1
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6.9k
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Comment: Comment: How to generate sequence length distribution from Fasta file
11 weeks ago by xiaoleiusc ▴ 140
0
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5
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1.2k
views
Is there a way to install Python version 2 on Mac with M3 chips?
NGS Python
updated 4 months ago by ▴ 90 • written 4 months ago by ▴ 140
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0
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1.2k
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Answer: Answer: Is there a way to install Python version 2 on Mac with M3 chips?
updated 4 months ago by 147k • written 4 months ago by ▴ 140
0
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2
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1.2k
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Comment: Comment: Is there a way to install Python version 2 on Mac with M3 chips?
4 months ago by xiaoleiusc ▴ 140
0
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0
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2.6k
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Comment: Comment: GTF file for HIV strain pNL4-3
8 months ago by xiaoleiusc ▴ 140
1
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4
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638
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How can I get the sequences of the first 20nt of introns and the last 250nt of introns of hg38 genome?
annotation RNA
updated 9 months ago by 8.9k • written 9 months ago by ▴ 140
0
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1
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14k
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Comment: Comment: Repeat masker bed file
9 months ago by xiaoleiusc ▴ 140
0
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1
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638
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Comment: Comment: How can I get the sequences of the first 20nt of introns and the last 250nt of i
9 months ago by xiaoleiusc ▴ 140
0
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0
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12k
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Comment: Comment: cutadapt for trimming reads to specific length
9 months ago by xiaoleiusc ▴ 140
0
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0
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12k
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Comment: Comment: cutadapt for trimming reads to specific length
9 months ago by xiaoleiusc ▴ 140
0
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0
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20k
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Comment: Comment: Downloading gtf file for RefSeq
10 months ago by xiaoleiusc ▴ 140
1
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0
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1.1k
views
Comment: Comment: Error message in Standalone BLAST
10 months ago by xiaoleiusc ▴ 140
0
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0
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1.1k
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Answer: Answer: IGV RNAseq- Splice junction
11 months ago by xiaoleiusc ▴ 140
0
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0
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3.7k
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Comment: Comment: "Valid" names for paired-end reads
11 months ago by xiaoleiusc ▴ 140
9
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6
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1.3k
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Search a read by its name in a big fastq.gz file
NGS fastq
updated 11 months ago by 44k • written 11 months ago by ▴ 140
0
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0
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1.8k
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Comment: Comment: Bowtie2 end-to-end versus local alignment for small RNAseq
11 months ago by xiaoleiusc ▴ 140
1
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0
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1.3k
views
Comment: Comment: Search a read by its name in a big fastq.gz file
11 months ago by xiaoleiusc ▴ 140
0
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0
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20k
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Comment: Comment: Running STAR aligner on paired-end reads as single-end read
11 months ago by xiaoleiusc ▴ 140
0
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1
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1.3k
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Comment: Comment: Search a read by its name in a big fastq.gz file
11 months ago by xiaoleiusc ▴ 140
0
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1
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3.9k
views
Comment: Comment: Should I remove Kmers identified in FastQC?
12 months ago by xiaoleiusc ▴ 140
0
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0
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4.1k
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Comment: Comment: Chimeric alignment with minimap2
12 months ago by xiaoleiusc ▴ 140
0
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1
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1.1k
views
Comment: Comment: Error message in Standalone BLAST
12 months ago by xiaoleiusc ▴ 140
0
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0
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8.4k
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Comment: Comment: Are XA: tagged reads == SA: tagged BWAMEM aligned reads?
12 months ago by xiaoleiusc ▴ 140
0
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0
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1.8k
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Comment: Comment: Star alignment - AS and MD tags
12 months ago by xiaoleiusc ▴ 140
0
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2
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5.5k
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Comment: Comment: Is trimming necessary for RNAseq?
12 months ago by xiaoleiusc ▴ 140
0
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0
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7.4k
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Comment: Comment: SE reads in fr-firststrand, fr-secondstrand
13 months ago by xiaoleiusc ▴ 140
2
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1
reply
683
views
are transcripts in the Ensembl transcript release of human from certain cell types?
annotation RNA-seq
updated 16 months ago by ▴ 550 • written 16 months ago by ▴ 140
0
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0
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625
views
Comment: Comment: multi-mapping reads settings in Rsubread or Rsubjunc
18 months ago by xiaoleiusc ▴ 140
1
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2
replies
625
views
multi-mapping reads settings in Rsubread or Rsubjunc
Rsubjunc RNA-seq
18 months ago by xiaoleiusc ▴ 140
1
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0
replies
5.2k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
21 months ago by xiaoleiusc ▴ 140
0
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1
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5.2k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
21 months ago by xiaoleiusc ▴ 140
0
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1
reply
5.2k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.3 years ago by xiaoleiusc ▴ 140
0
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0
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2.0k
views
Answer: Answer: Fastq reads mapped to the desired position on reference genome
updated 2.0 years ago by 44k • written 2.6 years ago by ▴ 140
0
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0
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1.6k
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Comment: Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
3.0 years ago by xiaoleiusc ▴ 140
0
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1
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1.6k
views
Comment: Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
3.0 years ago by xiaoleiusc ▴ 140
1
vote
5
replies
1.6k
views
Find a human mRNA transcript with specific dinucleotide frequencies close to user input values
Python RNA-seq R
updated 21 months ago by 44k • written 3.0 years ago by ▴ 140
0
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0
replies
6.3k
views
Comment: Comment: How To Join Text Files By A Certain Column (Accession Id)
3.1 years ago by xiaoleiusc ▴ 140
1
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1
reply
5.2k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.1 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
5.2k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.1 years ago by xiaoleiusc ▴ 140
0
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1
reply
5.2k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.1 years ago by xiaoleiusc ▴ 140
0
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1
reply
5.2k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.1 years ago by xiaoleiusc ▴ 140
0
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1
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67k
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Comment: Comment: Insert Size And Fragment Size ?
3.1 years ago by xiaoleiusc ▴ 140
1
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1
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1.9k
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Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
3.1 years ago by xiaoleiusc ▴ 140
0
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1
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26k
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Comment: Comment: Check if BAM is derived from pair-end or single-end reads?
3.1 years ago by xiaoleiusc ▴ 140
0
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1
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1.9k
views
Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
3.1 years ago by xiaoleiusc ▴ 140
2
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6
replies
1.9k
views
calculate nucleotides frequencies from mapped reads in a BAM file
RNA-seq
updated 3.1 years ago by 8.9k • written 3.1 years ago by ▴ 140
1
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0
replies
646
views
Is there a public database where I could download mRNA seq (transcriptome) data of 293T cells
RNA-seq Database Public
3.1 years ago by xiaoleiusc ▴ 140
0
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0
replies
16k
views
Comment: Comment: How to work out Z score for heatmaps for RNA seq dataset
3.1 years ago by xiaoleiusc ▴ 140
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