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Comment: Comment: How to work out Z score for heatmaps for RNA seq dataset
3.5 years ago by xiaoleiusc ▴ 140
0
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0
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44k
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Comment: Comment: Why Does Rna-Seq Read Count Fit Poisson Distribution?
3.5 years ago by xiaoleiusc ▴ 140
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0
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5.1k
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Comment: Comment: Forge a BSgenome data package
3.6 years ago by xiaoleiusc ▴ 140
0
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1
reply
2.7k
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Comment: Comment: Loading a genome in BSgenome
3.6 years ago by xiaoleiusc ▴ 140
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0
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15k
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Comment: Comment: Script To Calculate Dinucleotide Frequency For Many Sequences
3.5 years ago by xiaoleiusc ▴ 140
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0
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15k
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Comment: Comment: Script To Calculate Dinucleotide Frequency For Many Sequences
3.6 years ago by xiaoleiusc ▴ 140
1
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1
reply
847
views
BSgenomes for HIV viruses
CLIP-seq RNA-Seq CLIP-Seq
updated 3.7 years ago by 87k • written 3.7 years ago by ▴ 140
1
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0
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14k
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Comment: Comment: How Can I Split Paired End Fastq Files
3.8 years ago by xiaoleiusc ▴ 140
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0
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14k
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Comment: Comment: How Can I Split Paired End Fastq Files
3.8 years ago by xiaoleiusc ▴ 140
0
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0
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10k
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Comment: Comment: Split BAM file into two subsamples
3.8 years ago by xiaoleiusc ▴ 140
0
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0
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10k
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Comment: Comment: Split BAM file into two subsamples
3.8 years ago by xiaoleiusc ▴ 140
0
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0
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4.5k
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Comment: Comment: what is the deal with bioconda?
3.9 years ago by xiaoleiusc ▴ 140
2
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2
replies
1.4k
views
tools for calculating nucleotide composition of a gene
NGS
3.9 years ago by xiaoleiusc ▴ 140
0
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0
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4.8k
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Comment: Comment: Visualize nucleotides for every position in R
3.9 years ago by xiaoleiusc ▴ 140
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0
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4.3k
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Comment: C: convert DNA FASTA file to RNA FASTA file
4.1 years ago by xiaoleiusc ▴ 140
0
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0
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4.3k
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Comment: C: convert DNA FASTA file to RNA FASTA file
4.1 years ago by xiaoleiusc ▴ 140
0
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0
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4.3k
views
Comment: C: convert DNA FASTA file to RNA FASTA file
4.1 years ago by xiaoleiusc ▴ 140
2
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6
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4.3k
views
convert DNA FASTA file to RNA FASTA file
RNA-Seq ChIP-Seq sequence
updated 4.1 years ago by 13k • written 4.1 years ago by ▴ 140
0
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0
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5.0k
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Comment: C: chipseq -- annotate peaks with lncRNA
4.2 years ago by xiaoleiusc ▴ 140
0
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0
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954
views
Comment: C: R error: could not find function "makeTxDbFromUCSC"
4.2 years ago by xiaoleiusc ▴ 140
2
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2
replies
954
views
R error: could not find function "makeTxDbFromUCSC"
R RNA-Seq
4.2 years ago by xiaoleiusc ▴ 140
0
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0
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1.4k
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Comment: C: HIV NL4-3 transcriptome fasta
4.2 years ago by xiaoleiusc ▴ 140
0
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2
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1.4k
views
HIV NL4-3 transcriptome fasta
rna-seq CLIP-seq
updated 4.2 years ago by • 0 • written 5.0 years ago by ▴ 140
0
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0
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2.0k
views
Comment: C: PARalyzer error: * is not found in the .2bit file
updated 4.3 years ago by 45k • written 5.8 years ago by ▴ 140
0
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0
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2.0k
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Comment: C: PARalyzer error: * is not found in the .2bit file
updated 4.3 years ago by 45k • written 5.8 years ago by ▴ 140
0
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0
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2.0k
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Comment: C: PARalyzer error: * is not found in the .2bit file
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 140
0
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0
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4.3k
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Comment: C: Bowtie alignment run too long and not finishing job
4.6 years ago by xiaoleiusc ▴ 140
0
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1
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4.3k
views
Comment: C: Bowtie alignment run too long and not finishing job
4.6 years ago by xiaoleiusc ▴ 140
0
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1
reply
4.3k
views
Comment: C: Bowtie alignment run too long and not finishing job
4.6 years ago by xiaoleiusc ▴ 140
3
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6
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4.3k
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Bowtie alignment run too long and not finishing job
RNA-Seq ChIP-Seq
4.6 years ago by xiaoleiusc ▴ 140
0
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0
replies
844
views
Motif discovery of RNA binding proteins
CLIP-Seq RNA-Seq
4.6 years ago by xiaoleiusc ▴ 140
5
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7
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1.7k
views
Collapse mapped reads in sorted bam file based on the start and end position coordinates
rna-seq
updated 4.7 years ago by 150k • written 4.7 years ago by ▴ 140
0
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0
replies
1.7k
views
Comment: C: Collapse mapped reads in sorted bam file based on the start and end position coo
4.7 years ago by xiaoleiusc ▴ 140
0
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1
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1.7k
views
Comment: C: Collapse mapped reads in sorted bam file based on the start and end position coo
4.7 years ago by xiaoleiusc ▴ 140
0
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1
reply
1.0k
views
Comment: C: base composition of human genome
4.7 years ago by xiaoleiusc ▴ 140
5
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3
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1.0k
views
base composition of human genome
genome
updated 4.7 years ago by 13k • written 4.7 years ago by ▴ 140
5
votes
7
replies
3.6k
views
IGV viewer could not display genome sequences correctly
RNA-Seq
updated 5.0 years ago by ▴ 300 • written 5.2 years ago by ▴ 140
0
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0
replies
8.9k
views
Comment: C: Parameters That Determine Meme Speed And Homer Speed For Motif Discovery?
5.0 years ago by xiaoleiusc ▴ 140
3
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3
replies
1.4k
views
Why bowtie report same number of reads with different - k parameters?
RNA-Seq CLIP-seq
5.0 years ago by xiaoleiusc ▴ 140
1
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0
replies
1.4k
views
Comment: C: Why bowtie report same number of reads with different - k parameters?
5.0 years ago by xiaoleiusc ▴ 140
0
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1
reply
1.5k
views
Comment: C: How to get multi mappers from bowtie 1
5.0 years ago by xiaoleiusc ▴ 140
0
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1
reply
2.8k
views
Comment: C: GTF file for HIV strain pNL4-3
5.0 years ago by xiaoleiusc ▴ 140
0
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1
reply
11k
views
Comment: C: GTF/GFF for non-coding RNA
5.0 years ago by xiaoleiusc ▴ 140
0
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2
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3.8k
views
Comment: C: get gene biotype for hg38 refseq
5.0 years ago by xiaoleiusc ▴ 140
0
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0
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5.0k
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Comment: C: HIV : gtf or gff annotation
5.0 years ago by xiaoleiusc ▴ 140
0
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0
replies
4.6k
views
Comment: C: How to generate a pie chart of genomic annotations of ChIP peaks
5.1 years ago by xiaoleiusc ▴ 140
0
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1
reply
2.0k
views
Comment: C: PARalyzer error: * is not found in the .2bit file
5.1 years ago by xiaoleiusc ▴ 140
0
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0
replies
1.2k
views
Comment: C: filter out reads with specific properties from bam file
5.1 years ago by xiaoleiusc ▴ 140
0
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1
reply
1.2k
views
Comment: C: filter out reads with specific properties from bam file
5.1 years ago by xiaoleiusc ▴ 140
2
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4
replies
1.2k
views
filter out reads with specific properties from bam file
RNA-Seq CLIP-seq
updated 5.1 years ago by 166k • written 5.1 years ago by ▴ 140
120 results • Page 2 of 3
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