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Tool: Welome to try Circle-Map++ for detecting eccDNA
eccDNA ecDNA DNA Circle-Map Circular
10 weeks ago by xiaoguang ▴ 160
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16k
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Answer: Answer: Combine paired-end fastq files
3 months ago by xiaoguang ▴ 160
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0
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458
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Answer: Answer: Is there any tool that can search for a pattern (while allowing mismatch) in fas
3 months ago by xiaoguang ▴ 160
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0
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465
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Answer: Answer: Use alignment as reference genome to separate DNA from a mixed sample
3 months ago by xiaoguang ▴ 160
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0
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1.1k
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Answer: Answer: Access to fastq files on SRA Run browser
13 months ago by xiaoguang ▴ 160
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0
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530
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Answer: Answer: Bar plot in R
13 months ago by xiaoguang ▴ 160
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1.3k
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Answer: Answer: Importance of Data Structures for Bioinformatics?
14 months ago by xiaoguang ▴ 160
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633
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Answer: Answer: How to find positions with higher depth relative to their surroundings
14 months ago by xiaoguang ▴ 160
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1
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2.3k
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Comment: Comment: how to calculate BAF and LRR from VCF or BCF files?
14 months ago by xiaoguang ▴ 160
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5
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2.3k
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how to calculate BAF and LRR from VCF or BCF files?
SNP BAF LRR Variation
updated 5 weeks ago by • 0 • written 3.1 years ago by ▴ 160
1
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2.4k
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Answer: Answer: structural comparison with TM score
16 months ago by xiaoguang ▴ 160
1
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0
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3.2k
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Answer: Answer: BAM to Fastq
2.9 years ago by xiaoguang ▴ 160
0
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2
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1.5k
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Comment: Comment: GATK command for mutect2
2.9 years ago by xiaoguang ▴ 160
0
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0
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740
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Get Allele specific copy number regions from WGS data using ASCAT?
CNV ASCAT specific Allele WGS
3.1 years ago by xiaoguang ▴ 160
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0
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1.3k
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Comment: Comment: Do we need to filter out the 0 counts sgRNA in CRISPR analysis?
3.1 years ago by xiaoguang ▴ 160
1
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0
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4.9k
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Comment: Comment: What files (fasta, GTF) do I need for RNA seq analysis
3.1 years ago by xiaoguang ▴ 160
0
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1
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1.3k
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Answer: Answer: Do we need to filter out the 0 counts sgRNA in CRISPR analysis?
3.1 years ago by xiaoguang ▴ 160
0
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0
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1.9k
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Answer: Answer: How to retrieve KO IDs for a list of genes?
3.3 years ago by xiaoguang ▴ 160
0
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0
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4.5k
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Answer: Answer: How do I detect deletions?
3.3 years ago by xiaoguang ▴ 160
0
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1
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1.9k
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Comment: C: Differential analysis isoform level or gene level ?
4.0 years ago by xiaoguang ▴ 160
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0
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1.1k
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Comment: C: how to get the geneNames or bedfile from fasta sequences
4.0 years ago by xiaoguang ▴ 160
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0
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1.1k
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Comment: C: how to get the geneNames or bedfile from fasta sequences
4.0 years ago by xiaoguang ▴ 160
1
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1
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1.1k
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Comment: C: how to get the geneNames or bedfile from fasta sequences
4.0 years ago by xiaoguang ▴ 160
1
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0
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1.6k
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Comment: C: Filtering BAM files efficiently
4.0 years ago by xiaoguang ▴ 160
0
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1
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1.9k
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Comment: C: Differential analysis isoform level or gene level ?
4.0 years ago by xiaoguang ▴ 160
1
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0
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1.3k
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Answer: A: How to count the number of alignments in a bam file without using samtools?
4.0 years ago by xiaoguang ▴ 160
0
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1
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1.1k
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Answer: A: how to get the geneNames or bedfile from fasta sequences
4.0 years ago by xiaoguang ▴ 160
2
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1
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2.2k
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Can I use the SCENIC package to analyze the transcription factors in the bulk RNAseq data?
rna-seq SCENIC
updated 4.6 years ago by 12k • written 4.6 years ago by ▴ 160
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0
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6.0k
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Comment: C: Open Source Mass Spec Search Engines?
4.6 years ago by xiaoguang ▴ 160
5
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4
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4.8k
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How to understand the multi-sample processing of Seurat?
RNA-Seq scRNAseq seurat
updated 4.7 years ago by 9.0k • written 4.7 years ago by ▴ 160
1
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1
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885
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how to plot this picture?
R circos
4.7 years ago by xiaoguang ▴ 160
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0
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951
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Comment: C: When using monocle3 to calculate the pseudo time of 170,000 cells, an error is r
4.9 years ago by xiaoguang ▴ 160
0
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2
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951
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When using monocle3 to calculate the pseudo time of 170,000 cells, an error is reported, and the error is *** caught segfault *** address 0x2b3ae695f…
scRNA
4.9 years ago by xiaoguang ▴ 160
0
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0
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2.2k
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How to calculate pseudo time for all cells with monocle3
scRNAseq monocle3
5.0 years ago by xiaoguang ▴ 160
1
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3
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1.8k
views
How to get an exact match from the bam alignment file
bam bwa samtools
updated 5.2 years ago by ▴ 20 • written 5.3 years ago by ▴ 160
4
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5
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3.4k
views
how to caculate effective length for RNA sequencing?
rna-seq RNA-Seq R
updated 5.3 years ago by ★ 7.7k • written 5.4 years ago by ▴ 160
22
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15
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13k
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6 follow
How to normalized TPM with TMM method?
rna-seq edgeR TPM TMM
updated 2.7 years ago by ▴ 10 • written 5.4 years ago by ▴ 160
0
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2
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3.4k
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Comment: C: how to caculate effective length for RNA sequencing?
5.4 years ago by xiaoguang ▴ 160
0
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0
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3.3k
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Comment: C: proj_api.h not found in standard or given locations
5.4 years ago by xiaoguang ▴ 160
1
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2
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3.3k
views
proj_api.h not found in standard or given locations
R miniconda
updated 5.4 years ago by 12k • written 5.4 years ago by ▴ 160
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