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2
votes
2
replies
610
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X chromosome in bedtoolsIntersect
bedtools
updated 6 months ago by 165k • written 6 months ago by ▴ 40
0
votes
1
reply
601
views
gene body coverage with RSeqQC
rna-seq qc
updated 11 months ago by ★ 2.1k • written 11 months ago by ▴ 40
0
votes
1
reply
785
views
Comment: Comment: filtering lowly expressed exons
16 months ago by wiscoyogi ▴ 40
0
votes
3
replies
785
views
filtering lowly expressed exons
dexseq deseq2
updated 16 months ago by 87k • written 16 months ago by ▴ 40
0
votes
2
replies
626
views
Alignment prior to passing SAM/BAM to DEXSeq
STAR DEXSeq
updated 16 months ago by ▴ 80 • written 16 months ago by ▴ 40
2
votes
8
replies
1.9k
views
differential splicing between two groups for 5 genes
diffex genes IGV
updated 21 months ago by 4.6k • written 21 months ago by ▴ 40
0
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0
replies
1.9k
views
Comment: Comment: differential splicing between two groups for 5 genes
21 months ago by wiscoyogi ▴ 40
0
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0
replies
1.9k
views
Comment: Comment: differential splicing between two groups for 5 genes
21 months ago by wiscoyogi ▴ 40
0
votes
1
reply
1.1k
views
interpreting voom mean variance plots with large BCV and faint kink
filtering differential-expression voom gene
updated 2.1 years ago by ★ 7.8k • written 2.1 years ago by ▴ 40
2
votes
5
replies
1.3k
views
comparing fragmented RNA-seq to non-fragmented RNA-seq
voom differential fragmentation normalization limma
updated 2.8 years ago by ★ 7.8k • written 2.8 years ago by ▴ 40
0
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1
reply
1.3k
views
Comment: Comment: comparing fragmented RNA-seq to non-fragmented RNA-seq
2.8 years ago by wiscoyogi ▴ 40
0
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0
replies
1.3k
views
Comment: Comment: comparing fragmented RNA-seq to non-fragmented RNA-seq
2.8 years ago by wiscoyogi ▴ 40
0
votes
0
replies
1.6k
views
Comment: Comment: limma voom -- all genes after filtering are differentially expressed
2.8 years ago by wiscoyogi ▴ 40
1
vote
2
replies
1.6k
views
limma voom -- all genes after filtering are differentially expressed
expression differential voom RNAseq limma
updated 2.8 years ago by ★ 7.8k • written 2.8 years ago by ▴ 40
1
vote
1
reply
759
views
exact counts tables for limma voom guide
limma expression differential voom
updated 2.8 years ago by ★ 7.8k • written 2.8 years ago by ▴ 40
0
votes
1
reply
1.6k
views
Comment: Comment: unsorting a bam file
2.9 years ago by wiscoyogi ▴ 40
1
vote
0
replies
1.8k
views
Comment: Comment: How to normalize bulk and scRNA-seq data in order to compare them
2.9 years ago by wiscoyogi ▴ 40
0
votes
1
reply
1.6k
views
Comment: Comment: unsorting a bam file
2.9 years ago by wiscoyogi ▴ 40
2
votes
5
replies
1.6k
views
unsorting a bam file
star picard
updated 2.9 years ago by 14k • written 2.9 years ago by ▴ 40
1
vote
1
reply
1.8k
views
Answer: Answer: How to normalize bulk and scRNA-seq data in order to compare them
2.9 years ago by wiscoyogi ▴ 40
2
votes
6
replies
1.8k
views
diagnosing contamination in RNA-seq data
sequencing ngs bulk nonhuman
updated 3.1 years ago by 13k • written 3.1 years ago by ▴ 40
0
votes
2
replies
8.7k
views
Comment: Comment: downloading (and using) a NCBI BLAST database
3.1 years ago by wiscoyogi ▴ 40
0
votes
0
replies
8.7k
views
Comment: Comment: downloading (and using) a NCBI BLAST database
3.1 years ago by wiscoyogi ▴ 40
3
votes
13
replies
8.7k
views
downloading (and using) a NCBI BLAST database
blastn blast
updated 3.1 years ago by 55k • written 3.1 years ago by ▴ 40
0
votes
1
reply
8.7k
views
Comment: Comment: downloading (and using) a NCBI BLAST database
3.1 years ago by wiscoyogi ▴ 40
0
votes
1
reply
8.7k
views
Comment: Comment: downloading (and using) a NCBI BLAST database
3.1 years ago by wiscoyogi ▴ 40
0
votes
3
replies
2.6k
views
different ID for 'gene name' vs 'gene synonym' in ENSEMBL.
annotations gene Ensembl name
updated 3.5 years ago by 24k • written 3.5 years ago by ▴ 40
0
votes
0
replies
2.6k
views
Comment: Comment: different ID for 'gene name' vs 'gene synonym' in ENSEMBL.
3.5 years ago by wiscoyogi ▴ 40
0
votes
1
reply
1.7k
views
Comment: Comment: how htseq-count counts unstranded RNA-seq data
3.6 years ago by wiscoyogi ▴ 40
2
votes
3
replies
1.7k
views
how htseq-count counts unstranded RNA-seq data
htseq-count RNA-seq stranded
updated 3.6 years ago by 14k • written 3.6 years ago by ▴ 40
0
votes
1
reply
1.3k
views
TMM normalization for data across two sequencing batches
tmm normalization rnaseq
updated 4.0 years ago by 87k • written 4.0 years ago by ▴ 40
0
votes
1
reply
847
views
Comment: C: comparing 2 datasets, one with high PCR duplicates
5.0 years ago by wiscoyogi ▴ 40
1
vote
0
replies
847
views
Comment: C: comparing 2 datasets, one with high PCR duplicates
5.0 years ago by wiscoyogi ▴ 40
1
vote
5
replies
847
views
comparing 2 datasets, one with high PCR duplicates
PCR duplicates data standardization RNA-Seq
5.0 years ago by wiscoyogi ▴ 40
1
vote
1
reply
2.1k
views
trimming A tails: clip3pAdapterSeq in star vs cutadapt
STAR RNA-Seq
5.6 years ago by wiscoyogi ▴ 40
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