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2
votes
3
replies
1.2k
views
Obtain genomic coordinates of all occurrences of a small sequence (i.e: TCTTCTC) in a reference genome
biopython binding-site genomics
updated 17 months ago by 4.5k • written 17 months ago by ▴ 10
0
votes
0
replies
471
views
Check most expressed isoform of mouse gene in specific tissue
FANTOM gene-expression MGI mouse
updated 20 months ago by 44k • written 20 months ago by ▴ 10
3
votes
1
reply
1.4k
views
ChIP-seq Peak calling from BED or WIG file
ENCODE ChIP-seq
updated 3.1 years ago by 85k • written 3.1 years ago by ▴ 10
0
votes
1
reply
602
views
Histone marks enrichment analysis
RNA-Seq
updated 3.3 years ago by ▴ 500 • written 3.3 years ago by ▴ 10
2
votes
1
reply
604
views
Handling RNA-seq samples from the same individual in DEseq2 analysis
DEseq2 RNA-seq
updated 3.4 years ago by ★ 18k • written 3.4 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Extract reads mapped within chosen intronic region from BAM file (no junctions)
bedtools RNA-seq samtools
updated 3.5 years ago by 164k • written 3.5 years ago by ▴ 10
1
vote
1
reply
924
views
About gene expression data in FPKM stored in public databases
RNA-Seq
updated 4.2 years ago by 102k • written 4.2 years ago by ▴ 10
0
votes
0
replies
523
views
Histone modifications enrichment from genomic coordinates
sequence
4.3 years ago by gspirito ▴ 10
0
votes
1
reply
1.6k
views
Comment: C: RNA-seq based gene signature analysis
4.6 years ago by gspirito ▴ 10
3
votes
3
replies
1.6k
views
RNA-seq based gene signature analysis
RNA-Seq
updated 4.6 years ago by 88k • written 4.6 years ago by ▴ 10
3
votes
3
replies
1.5k
views
Unbiased clustering from bulk tissue RNA-seq?
RNA-Seq clustering
updated 4.7 years ago by 85k • written 4.7 years ago by ▴ 10
2
votes
1
reply
930
views
Chromatin states in human neurons?
ChIP-Seq chromatin states neuron
updated 4.8 years ago by ★ 2.9k • written 4.8 years ago by ▴ 10
1
vote
2
replies
912
views
How can I assess the probability of a gene being disease-related?
gene networks gene gene interactions
updated 5.2 years ago by 47k • written 5.2 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Problem with Cytoskape/DyNets
DyNets Cytoscape gene network
5.2 years ago by gspirito ▴ 10
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