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1
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3
replies
4.2k
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How to run Picard docker image
next-gen alignment docker picard
updated 9 weeks ago by ▴ 390 • written 5.2 years ago by ▴ 200
0
votes
0
replies
1.7k
views
Comment: Comment: Filtering a GFF to retain only exons with CDS annotation
2.4 years ago by elcortegano ▴ 200
1
vote
2
replies
1.7k
views
Filtering a GFF to retain only exons with CDS annotation
gff annotation
2.4 years ago by elcortegano ▴ 200
1
vote
1
reply
2.0k
views
Comment: Comment: Faster alternative to samtools calmd
2.8 years ago by elcortegano ▴ 200
0
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1
reply
2.0k
views
Comment: Comment: Faster alternative to samtools calmd
2.8 years ago by elcortegano ▴ 200
0
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1
reply
2.0k
views
Comment: Comment: Faster alternative to samtools calmd
2.8 years ago by elcortegano ▴ 200
2
votes
8
replies
2.0k
views
Faster alternative to samtools calmd
alignment BAM MD
updated 2.8 years ago by 7.0k • written 2.8 years ago by ▴ 200
2
votes
0
replies
14k
views
Comment: Comment: find positions of a short sequence in a genome
3.0 years ago by elcortegano ▴ 200
0
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0
replies
1.7k
views
Comment: Comment: Getting coordinates for a given sequence motif
3.0 years ago by elcortegano ▴ 200
7
votes
4
replies
1.7k
views
Getting coordinates for a given sequence motif
genome assembly
updated 3.0 years ago by 85k • written 3.0 years ago by ▴ 200
3
votes
1
reply
1.3k
views
Calling TE sequences from VCF files
next-gen variant-calling sniffles
updated 13 months ago by 44k • written 5.0 years ago by ▴ 200
0
votes
2
replies
1.1k
views
Arrow crashes during second iteration
genome polish arrow gcpp
3.8 years ago by elcortegano ▴ 200
0
votes
0
replies
1.1k
views
Comment: C: Arrow crashes during second iteration
3.8 years ago by elcortegano ▴ 200
1
vote
1
reply
25k
views
Comment: C: Get intronic and intergenic sequences based on gff file
4.3 years ago by elcortegano ▴ 200
0
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0
replies
2.3k
views
Answer: A: Syntax Error near unexpected token (
4.4 years ago by elcortegano ▴ 200
0
votes
0
replies
2.5k
views
Comment: C: biomart webservice error when using data from Phytozome
4.4 years ago by elcortegano ▴ 200
10
votes
9
replies
2.5k
views
biomart webservice error when using data from Phytozome
R software error
updated 4.4 years ago by ★ 2.1k • written 4.4 years ago by ▴ 200
0
votes
1
reply
2.5k
views
Comment: C: biomart webservice error when using data from Phytozome
4.4 years ago by elcortegano ▴ 200
0
votes
2
replies
2.5k
views
Comment: C: biomart webservice error when using data from Phytozome
4.4 years ago by elcortegano ▴ 200
4
votes
2
replies
1.6k
views
Compilation error for PAML
software error
updated 2.2 years ago by ▴ 10 • written 4.5 years ago by ▴ 200
0
votes
0
replies
954
views
Distribution of QUAL scores in variant and invatiant sites
next-gen
4.7 years ago by elcortegano ▴ 200
2
votes
0
replies
1.8k
views
Wrong intervals with bedtools makewindows
next-gen bedtools
4.7 years ago by elcortegano ▴ 200
1
vote
0
replies
1.3k
views
Answer: A: Compute Mapping quality for invariant sites
4.7 years ago by elcortegano ▴ 200
1
vote
3
replies
1.3k
views
Compute Mapping quality for invariant sites
next-gen mapping-quality
4.7 years ago by elcortegano ▴ 200
0
votes
0
replies
1.3k
views
Comment: C: Compute Mapping quality for invariant sites
4.7 years ago by elcortegano ▴ 200
0
votes
1
reply
973
views
Comment: C: Estimate distances to closest gene from VCF and GFF files
4.7 years ago by elcortegano ▴ 200
2
votes
3
replies
973
views
Estimate distances to closest gene from VCF and GFF files
next-gen vcf gff
4.7 years ago by elcortegano ▴ 200
8
votes
7
replies
2.5k
views
How to properly measure the length of a reference genome
next-gen genome k-mer
updated 4.8 years ago by 3.1k • written 5.2 years ago by ▴ 200
1
vote
0
replies
2.5k
views
Answer: A: How to properly measure the length of a reference genome
4.8 years ago by elcortegano ▴ 200
0
votes
0
replies
1.1k
views
What does "Infinity" QUAL values mean in VCF files
next-gen vcf
5.0 years ago by elcortegano ▴ 200
6
votes
11
replies
1.9k
views
Are reads with the same length and position always "duplicates"
next-gen picard
5.1 years ago by elcortegano ▴ 200
0
votes
0
replies
1.9k
views
Comment: C: Are reads with the same length and position always "duplicates"
5.1 years ago by elcortegano ▴ 200
0
votes
1
reply
1.9k
views
Comment: C: Are reads with the same length and position always "duplicates"
5.1 years ago by elcortegano ▴ 200
0
votes
1
reply
1.9k
views
Comment: C: Are reads with the same length and position always "duplicates"
5.1 years ago by elcortegano ▴ 200
0
votes
0
replies
1.9k
views
Comment: C: Are reads with the same length and position always "duplicates"
5.1 years ago by elcortegano ▴ 200
0
votes
0
replies
1.9k
views
Comment: C: Are reads with the same length and position always "duplicates"
5.1 years ago by elcortegano ▴ 200
4
votes
0
replies
5.7k
views
Comment: C: Is it possible to run IGV in batch mode without opening the GUI?
5.1 years ago by elcortegano ▴ 200
16
votes
3
replies
5.7k
views
Is it possible to run IGV in batch mode without opening the GUI?
next-gen alignment igv
updated 5.1 years ago by ★ 3.5k • written 5.1 years ago by ▴ 200
9
votes
11
replies
5.1k
views
6 follow
Is it possible to retrieve the original reads from a BAM file?
next-gen bam fastq
updated 5.1 years ago by ▴ 310 • written 5.1 years ago by ▴ 200
2
votes
1
reply
5.1k
views
Answer: A: Is it possible to retrieve the original reads from a BAM file?
5.1 years ago by elcortegano ▴ 200
0
votes
1
reply
5.1k
views
Comment: C: Is it possible to retrieve the original reads from a BAM file?
5.1 years ago by elcortegano ▴ 200
0
votes
0
replies
4.2k
views
Answer: A: How to run Picard docker image
5.2 years ago by elcortegano ▴ 200
0
votes
0
replies
2.5k
views
Comment: C: How to properly measure the length of a reference genome
5.2 years ago by elcortegano ▴ 200
0
votes
0
replies
2.5k
views
Comment: C: How to properly measure the length of a reference genome
5.2 years ago by elcortegano ▴ 200
1
vote
1
reply
1.7k
views
Any recommendations for improving Base Quality Score Recalibration (BQSR) for non-model organisms?
bqsr next-gen variant-calling
updated 13 months ago by 44k • written 5.2 years ago by ▴ 200
0
votes
0
replies
3.0k
views
Comment: C: MarkDuplicates: Mates are missing
5.2 years ago by elcortegano ▴ 200
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