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Comment: Comment: Viral genes not showing up in combined mouse+virus alignment
11 months ago by cook.675 ▴ 230
0
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3
replies
662
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Viral genes not showing up in combined mouse+virus alignment
RNAseq
11 months ago by cook.675 ▴ 230
0
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1
reply
662
views
Comment: Comment: Viral genes not showing up in combined mouse+virus alignment
12 months ago by cook.675 ▴ 230
0
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0
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1.0k
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Comment: Comment: featureCount Error "No paired-end reads were detected in paired-end read library
12 months ago by cook.675 ▴ 230
0
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2
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1.0k
views
featureCount Error "No paired-end reads were detected in paired-end read library"
Subread RNAseq featureCount
updated 12 months ago by 13k • written 12 months ago by ▴ 230
1
vote
4
replies
1.0k
views
RNAseq how to map Mouse+Virus Genome with STAR
STAR GTF RNA-seq fasta
updated 12 months ago by 147k • written 12 months ago by ▴ 230
0
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1
reply
1.0k
views
Comment: Comment: RNAseq how to map Mouse+Virus Genome with STAR
updated 12 months ago by 147k • written 12 months ago by ▴ 230
0
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2
replies
568
views
How to bin groups of 20 cells based amount of a metadata value
data seurat scRNA-seq R
updated 2.6 years ago by 147k • written 2.6 years ago by ▴ 230
0
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1
reply
568
views
Answer: Answer: How to bin groups of 20 cells based amount of a metadata value
2.6 years ago by cook.675 ▴ 230
0
votes
1
reply
603
views
How to label metadata of Seurat object based gene read count
seurat scRNA-seq
updated 2.7 years ago by 13k • written 2.7 years ago by ▴ 230
14
votes
12
replies
30k
views
10 follow
Pull number of cells in cluster from seurat object
RNA-Seq seurat
updated 2.7 years ago by 147k • written 5.2 years ago by ▴ 230
4
votes
6
replies
13k
views
Looking for differential gene expression between treatment, within a specific cluster (seurat)
seurat
updated 6 months ago by ★ 18k • written 5.2 years ago by ▴ 230
0
votes
2
replies
727
views
RNAseq Per tile sequence quality question
RNAseq fastqc
3.6 years ago by cook.675 ▴ 230
0
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0
replies
727
views
Comment: Comment: RNAseq Per tile sequence quality question
3.6 years ago by cook.675 ▴ 230
7
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3
replies
12k
views
appending information to seurat object meta.data
scRNA seurat
updated 3.3 years ago by ▴ 310 • written 5.0 years ago by ▴ 230
4
votes
3
replies
10k
views
How to remove entire rows from seurat object based on cellhash read
seurat
updated 4.6 years ago by • 0 • written 5.2 years ago by ▴ 230
1
vote
1
reply
1.8k
views
Calling gene names from a list within Seurat subset function
seurat RNA-Seq
updated 19 months ago by • 0 • written 4.6 years ago by ▴ 230
1
vote
1
reply
799
views
Summing data from 3 different parts of an R object at once
R seurat scRNA seq
updated 5.0 years ago by 20 • written 5.1 years ago by ▴ 230
0
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0
replies
1.4k
views
Comment: C: How to extract a specific gene sequence for a specific cell from scRNA-seq fastq
5.0 years ago by cook.675 ▴ 230
0
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2
replies
1.4k
views
How to extract a specific gene sequence for a specific cell from scRNA-seq fastq file
scRNA-seq sequencing
updated 5.0 years ago by • 0 • written 5.0 years ago by ▴ 230
0
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1
reply
22k
views
Comment: C: subsetting out cells from seurat object based on expression of 1 gene
5.0 years ago by cook.675 ▴ 230
0
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6
replies
2.2k
views
Examination of data matrix from CITE-seq-counts
RNA-Seq seurat
updated 5.0 years ago by 20 • written 5.1 years ago by ▴ 230
0
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1
reply
22k
views
Comment: C: subsetting out cells from seurat object based on expression of 1 gene
5.0 years ago by cook.675 ▴ 230
0
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0
replies
6.6k
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Comment: C: How to combine seperate seurat meta.data ID;s into one column?
5.0 years ago by cook.675 ▴ 230
0
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2
replies
6.6k
views
How to combine seperate seurat meta.data ID;s into one column?
seurat scRNA
updated 5.0 years ago by 44k • written 5.0 years ago by ▴ 230
5
votes
10
replies
22k
views
subsetting out cells from seurat object based on expression of 1 gene
seurat R
updated 3.2 years ago by ▴ 100 • written 5.1 years ago by ▴ 230
6
votes
3
replies
4.0k
views
A brief question regarding regressing out cell cycle effects or ribosomal/mitochondrial genes
seuart scRNA seq
updated 5.0 years ago by ★ 18k • written 5.0 years ago by ▴ 230
0
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1
reply
1.2k
views
Comment: C: DEG data per-cell
5.1 years ago by cook.675 ▴ 230
0
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1
reply
1.2k
views
Comment: C: DEG data per-cell
5.1 years ago by cook.675 ▴ 230
0
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5
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1.2k
views
DEG data per-cell
RNA-Seq
5.1 years ago by cook.675 ▴ 230
0
votes
0
replies
22k
views
Comment: C: subsetting out cells from seurat object based on expression of 1 gene
5.1 years ago by cook.675 ▴ 230
0
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1
reply
22k
views
Comment: C: subsetting out cells from seurat object based on expression of 1 gene
5.1 years ago by cook.675 ▴ 230
0
votes
0
replies
1.5k
views
Interpreting DEG heatmap between treatment groups
heatmap scRNASEQ
5.1 years ago by cook.675 ▴ 230
0
votes
0
replies
1.4k
views
Comment: C: QC filtering by Count depth
5.1 years ago by cook.675 ▴ 230
0
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0
replies
2.4k
views
Answer: C: How to concurrently filter RNA and CITEseq data within seurat object
5.1 years ago by cook.675 ▴ 230
0
votes
1
reply
2.4k
views
How to concurrently filter RNA and CITEseq data within seurat object
scRNA seurat
5.1 years ago by cook.675 ▴ 230
0
votes
1
reply
1.4k
views
QC filtering by Count depth
scRNAseq
5.1 years ago by cook.675 ▴ 230
0
votes
0
replies
2.2k
views
Comment: C: PCA plot interpretation from scRNA data set
5.1 years ago by cook.675 ▴ 230
0
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1
reply
2.2k
views
Comment: C: PCA plot interpretation from scRNA data set
5.1 years ago by cook.675 ▴ 230
0
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6
replies
2.2k
views
PCA plot interpretation from scRNA data set
PCA scRNA seq seurat
5.1 years ago by cook.675 ▴ 230
0
votes
0
replies
799
views
Answer: C: Summing data from 3 different parts of an R object at once
5.1 years ago by cook.675 ▴ 230
0
votes
0
replies
1.8k
views
Comment: C: subsetting matrix elements and creating a histogram
5.1 years ago by cook.675 ▴ 230
0
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1
reply
1.8k
views
Comment: C: subsetting matrix elements and creating a histogram
5.1 years ago by cook.675 ▴ 230
0
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1
reply
1.8k
views
Comment: C: subsetting matrix elements and creating a histogram
5.1 years ago by cook.675 ▴ 230
0
votes
1
reply
1.8k
views
Comment: C: subsetting matrix elements and creating a histogram
5.1 years ago by cook.675 ▴ 230
0
votes
6
replies
1.8k
views
subsetting matrix elements and creating a histogram
RNA-Seq
updated 5.1 years ago by 44k • written 5.1 years ago by ▴ 230
0
votes
0
replies
2.2k
views
Comment: C: Examination of data matrix from CITE-seq-counts
5.1 years ago by cook.675 ▴ 230
0
votes
1
reply
2.2k
views
Comment: C: Examination of data matrix from CITE-seq-counts
5.1 years ago by cook.675 ▴ 230
0
votes
1
reply
2.2k
views
Comment: C: Examination of data matrix from CITE-seq-counts
5.1 years ago by cook.675 ▴ 230
0
votes
0
replies
2.2k
views
Comment: C: Examination of data matrix from CITE-seq-counts
5.1 years ago by cook.675 ▴ 230
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