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0
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replies
885
views
How to extract uniquely aligned paired end reads obtained from freebayes using diffrent parmeter combinations of samtools?
NGS read filtering
Samtools
freebayes
4.4 years ago by
nadiabeg.comsats
▴ 10
0
votes
0
replies
672
views
Variant calling and alignment stats
alignment
SNP
4.5 years ago by
nadiabeg.comsats
▴ 10
3
votes
2
replies
1.4k
views
nucleotide blast of flanking sequences around SNPs
SNP
nBLAST
updated 4.6 years ago by
David Gortler
▴ 40 • written 4.6 years ago by
nadiabeg.comsats
▴ 10
0
votes
1
reply
1.4k
views
Comment:
C: Flanking sequence retreival
4.8 years ago by
nadiabeg.comsats
▴ 10
0
votes
1
reply
1.4k
views
Comment:
C: Flanking sequence retreival
4.8 years ago by
nadiabeg.comsats
▴ 10
0
votes
1
reply
7.9k
views
Comment:
C: Extract SNPs flanking sequences based on VCF and genome Fasta files
4.8 years ago by
nadiabeg.comsats
▴ 10
3
votes
6
replies
1.4k
views
Flanking sequence retreival
Variants
fasta sequence extraction
updated 4.8 years ago by
finswimmer
16k • written 4.8 years ago by
nadiabeg.comsats
▴ 10
0
votes
0
replies
1.5k
views
Bi-allelic SNP filtering
bcftools
bi-allelic snps
tetraploid genome
updated 4.9 years ago by
Pierre Lindenbaum
164k • written 4.9 years ago by
nadiabeg.comsats
▴ 10
0
votes
0
replies
949
views
Filtering variants on the basis of average depth plus 3 standard deviation
variants
NGS
Variant filtering
4.9 years ago by
nadiabeg.comsats
▴ 10
0
votes
1
reply
748
views
How to create snpEff data base for newly assembled genome?
genome
SNP
4.9 years ago by
nadiabeg.comsats
▴ 10
0
votes
1
reply
2.0k
views
Comment:
C: How to add path of cutadapt in trim_galore perl script?
4.9 years ago by
nadiabeg.comsats
▴ 10
0
votes
3
replies
2.0k
views
How to add path of cutadapt in trim_galore perl script?
next-gen
updated 4.9 years ago by
padwalmk
▴ 140 • written 4.9 years ago by
nadiabeg.comsats
▴ 10
0
votes
0
replies
920
views
10x genomics linked reads-- preprocessing
alignment
10x Genomics
5.0 years ago by
nadiabeg.comsats
▴ 10
0
votes
0
replies
2.3k
views
Comment:
C: Using freebayes to call variants
5.0 years ago by
nadiabeg.comsats
▴ 10
0
votes
0
replies
1.1k
views
Comment:
C: Variant using freebayes
5.0 years ago by
nadiabeg.comsats
▴ 10
1
vote
2
replies
1.1k
views
Variant using freebayes
freebayes
10x genomics
tetraploid genome
updated 5.0 years ago by
colindaven
7.0k • written 5.0 years ago by
nadiabeg.comsats
▴ 10
0
votes
0
replies
2.9k
views
Comment:
C: Getting uniquely aligned properly paired reads
5.0 years ago by
nadiabeg.comsats
▴ 10
0
votes
0
replies
2.9k
views
Comment:
A: Getting uniquely aligned properly paired reads
5.0 years ago by
nadiabeg.comsats
▴ 10
1
vote
8
replies
2.9k
views
Getting uniquely aligned properly paired reads
10XGenomics
Properly paired unique reads
5.0 years ago by
nadiabeg.comsats
▴ 10
0
votes
1
reply
2.9k
views
Comment:
C: Getting uniquely aligned properly paired reads
5.0 years ago by
nadiabeg.comsats
▴ 10
1
vote
1
reply
1.4k
views
Trimmomatics_ loading module error
Trimmomatic-0.39
updated 5.1 years ago by
lieven.sterck
15k • written 5.1 years ago by
nadiabeg.comsats
▴ 10
21 results • Page
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