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2
votes
3
replies
5.0k
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Functional enrichment analysis of bacteria
GO enrichment DAVID bacteria clusterProfiler R
updated 3.7 years ago by ★ 2.6k • written 4.4 years ago by ▴ 110
0
votes
1
reply
972
views
Comment: C: Size factors upon collapsing replicates in RNA-seq analysis
4.2 years ago by mickey_95 ▴ 110
1
vote
3
replies
972
views
Size factors upon collapsing replicates in RNA-seq analysis
RNA-Seq DESeq2 R
4.2 years ago by mickey_95 ▴ 110
0
votes
0
replies
5.0k
views
Comment: C: Functional enrichment analysis of bacteria
4.3 years ago by mickey_95 ▴ 110
1
vote
1
reply
1.8k
views
Comment: C: RNA-seq expression patterns
4.4 years ago by mickey_95 ▴ 110
0
votes
1
reply
1.8k
views
Comment: C: RNA-seq expression patterns
4.4 years ago by mickey_95 ▴ 110
4
votes
5
replies
1.8k
views
RNA-seq expression patterns
rna-seq pattern analysis differential expression
4.4 years ago by mickey_95 ▴ 110
17
votes
2
replies
15k
views
Finding overlaps between GRanges objects
GRanges promoter peak IRanges ChIP-Seq
updated 4.5 years ago by ▴ 960 • written 4.5 years ago by ▴ 110
8
votes
5
replies
5.1k
views
TSS metaprofile using Deeptools
Deeptools computeMatrix GTF metaprofile
updated 4.7 years ago by ▴ 40 • written 4.8 years ago by ▴ 110
0
votes
2
replies
5.1k
views
Comment: C: TSS metaprofile using Deeptools
4.8 years ago by mickey_95 ▴ 110
0
votes
0
replies
1.9k
views
Creating TxDB objects from different sources
TxDb genome annotation Biomart Ensembl
4.8 years ago by mickey_95 ▴ 110
0
votes
0
replies
6.4k
views
Comment: C: ATAC-seq coverage tracks using bamCoverage from Deeptools
4.9 years ago by mickey_95 ▴ 110
0
votes
1
reply
6.4k
views
Comment: C: ATAC-seq coverage tracks using bamCoverage from Deeptools
4.9 years ago by mickey_95 ▴ 110
1
vote
4
replies
6.4k
views
ATAC-seq coverage tracks using bamCoverage from Deeptools
ATAC-seq Deeptools bamCoverage bigwig
4.9 years ago by mickey_95 ▴ 110
1
vote
1
reply
2.0k
views
Star alignment - AS and MD tags
alignment ngs Star SAM format SAM alignment tags
updated 18 months ago by ▴ 140 • written 5.0 years ago by ▴ 110
0
votes
0
replies
2.8k
views
Comment: C: Counting uniquely mapped reads - ambiguous results
5.0 years ago by mickey_95 ▴ 110
0
votes
1
reply
2.8k
views
Comment: C: Counting uniquely mapped reads - ambiguous results
5.0 years ago by mickey_95 ▴ 110
3
votes
4
replies
2.8k
views
Counting uniquely mapped reads - ambiguous results
Star alignment samtools mapping
updated 2.1 years ago by 45k • written 5.0 years ago by ▴ 110
0
votes
0
replies
4.8k
views
Comment: C: Low number of peaks and weird TSS profile
5.3 years ago by mickey_95 ▴ 110
0
votes
1
reply
4.8k
views
Comment: C: Low number of peaks and weird TSS profile
5.3 years ago by mickey_95 ▴ 110
0
votes
1
reply
4.8k
views
Comment: C: Low number of peaks and weird TSS profile
5.3 years ago by mickey_95 ▴ 110
0
votes
1
reply
4.8k
views
Comment: C: Low number of peaks and weird TSS profile
5.3 years ago by mickey_95 ▴ 110
0
votes
10
replies
4.8k
views
Low number of peaks and weird TSS profile
ATAC-seq
updated 5.3 years ago by 87k • written 5.3 years ago by ▴ 110
0
votes
0
replies
4.8k
views
Comment: C: Low number of peaks and weird TSS profile
5.3 years ago by mickey_95 ▴ 110
0
votes
0
replies
4.0k
views
Comment: C: DiffBind - normalization methods with biologically-relevant differences in signa
5.5 years ago by mickey_95 ▴ 110
0
votes
0
replies
3.0k
views
Comment: C: DESeq2 design matrix
5.5 years ago by mickey_95 ▴ 110
0
votes
1
reply
3.0k
views
Comment: C: DESeq2 design matrix
5.5 years ago by mickey_95 ▴ 110
0
votes
1
reply
3.0k
views
Comment: C: DESeq2 design matrix
5.5 years ago by mickey_95 ▴ 110
4
votes
8
replies
3.0k
views
DESeq2 design matrix
DESeq2 ATAC-seq DE analysis
updated 5.5 years ago by 87k • written 5.5 years ago by ▴ 110
0
votes
0
replies
8.0k
views
Comment: C: Convert Granges list of peaks into consensus counts
5.6 years ago by mickey_95 ▴ 110
7
votes
2
replies
3.7k
views
ATAC-seq peak calling
ATAC-seq peak calling MACS2
updated 8 months ago by ▴ 70 • written 5.6 years ago by ▴ 110
0
votes
0
replies
8.0k
views
Comment: C: Convert Granges list of peaks into consensus counts
5.6 years ago by mickey_95 ▴ 110
1
vote
1
reply
8.0k
views
Comment: C: Convert Granges list of peaks into consensus counts
5.6 years ago by mickey_95 ▴ 110
0
votes
1
reply
8.0k
views
Comment: C: Convert Granges list of peaks into consensus counts
5.6 years ago by mickey_95 ▴ 110
34 results • Page 1 of 1
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