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2
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0
replies
188
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Answer: Answer: Gam format specification
2 days ago by Jouni Sirén ▴ 470
0
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0
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532
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Comment: Comment: Question about variant calling method using pangenome-graph
5 days ago by Jouni Sirén ▴ 470
3
votes
1
reply
587
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Answer: Answer: Query about vg (and vg giraffe) for pangenome creation and VC
7 weeks ago by Jouni Sirén ▴ 470
2
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0
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415
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Answer: Answer: which haplotypes were saved in .gbz file?
11 weeks ago by Jouni Sirén ▴ 470
1
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1
reply
679
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Comment: Comment: What path list should be used to surject GAM to GRCh38/CHM13 reference genome
5 months ago by Jouni Sirén ▴ 470
1
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1
reply
679
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Answer: Answer: What path list should be used to surject GAM to GRCh38/CHM13 reference genome
5 months ago by Jouni Sirén ▴ 470
2
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1
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500
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Answer: Answer: vg autoindex seems stuck after a week of running
6 months ago by Jouni Sirén ▴ 470
2
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1
reply
548
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Answer: Answer: How to parallelize running vg autoindex to create graph references from VCFs wit
8 months ago by Jouni Sirén ▴ 470
2
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1
reply
581
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Answer: Answer: Regarding the node length requirements for using gfa files in vg giraffe
11 months ago by Jouni Sirén ▴ 470
0
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1
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1.7k
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Comment: Comment: build error with vg tools
16 months ago by Jouni Sirén ▴ 470
1
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0
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1.4k
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Comment: Comment: warning[vg::Watchdog]
17 months ago by Jouni Sirén ▴ 470
1
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0
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1.2k
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Answer: Answer: Constructing a vg graph from MSA with a large number of sequences
2.9 years ago by Jouni Sirén ▴ 470
1
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0
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1.2k
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Answer: Answer: vg tools, I ran vg autoindex -w giraffe and use splited vcf file (multi vcf file
2.9 years ago by Jouni Sirén ▴ 470
2
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1
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1.4k
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Answer: Answer: I ran autoindex giraffe of vg tools , Step : Constructing a greedy path cover GB
2.9 years ago by Jouni Sirén ▴ 470
1
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0
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2.0k
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Comment: Comment: Creating a variation graph for Giraffe alignment from assemblies
3.3 years ago by Jouni Sirén ▴ 470
3
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1
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2.0k
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Answer: Answer: Creating a variation graph for Giraffe alignment from assemblies
3.3 years ago by Jouni Sirén ▴ 470
2
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1
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1.1k
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Answer: Answer: VG Installation with Ubuntu
3.3 years ago by Jouni Sirén ▴ 470
2
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0
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2.4k
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Answer: Answer: How to run vg giraffe for sv genotyping?
3.3 years ago by Jouni Sirén ▴ 470
0
votes
1
reply
1.4k
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Comment: Comment: Issue with memory and the gcsa index in toil-vg
3.5 years ago by Jouni Sirén ▴ 470
1
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0
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1.3k
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Answer: A: vg index memory allocation
3.9 years ago by Jouni Sirén ▴ 470
0
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2
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1.4k
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Answer: A: In 'vg construct', is it possible to have the variant paths be labeled with sam
4.0 years ago by Jouni Sirén ▴ 470
2
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0
replies
1.6k
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Answer: A: Issues calling variants with vg when using other tools upstream
4.0 years ago by Jouni Sirén ▴ 470
1
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0
replies
1.6k
views
Answer: A: vg gam file statistics: how many reads are mapped
4.0 years ago by Jouni Sirén ▴ 470
1
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0
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1.7k
views
Answer: A: vg path associated with sample name
4.0 years ago by Jouni Sirén ▴ 470
3
votes
1
reply
926
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Answer: A: Best way to obtain reference and non-reference k-mer
4.4 years ago by Jouni Sirén ▴ 470
2
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1
reply
1.2k
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Answer: A: Vg gamsort temporary folder
4.4 years ago by Jouni Sirén ▴ 470
2
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0
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1.6k
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Answer: A: Extract linear representation of paths in VG graph
4.7 years ago by Jouni Sirén ▴ 470
0
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0
replies
1.3k
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Comment: C: More haplotype threads than expected
4.9 years ago by Jouni Sirén ▴ 470
3
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0
replies
1.4k
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Answer: A: Error in vg : vg Assertion `reference_for.count(fasta_contig)' failed.
5.0 years ago by Jouni Sirén ▴ 470
2
votes
0
replies
1.3k
views
Answer: A: How much memory do we need for pruning a variation graph of a chromosome?
5.1 years ago by Jouni Sirén ▴ 470
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