Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
3
votes
1
reply
602
views
Answer: Answer: Does vg giraffe output secondary and supplimentary alignments?
8 weeks ago by Jouni Sirén ▴ 670
0
votes
0
replies
590
views
Answer: Answer: Question about `vg construct`
10 weeks ago by Jouni Sirén ▴ 670
2
votes
1
reply
629
views
Answer: Answer: Issues with vg surject into paths
11 weeks ago by Jouni Sirén ▴ 670
2
votes
3
replies
728
views
Answer: Answer: Question about `vg giraffe`
11 weeks ago by Jouni Sirén ▴ 670
1
vote
0
replies
752
views
Comment: Comment: GBWT Construction Error: "Sources X and Y both have node Z" When Building GBZ fr
12 weeks ago by Jouni Sirén ▴ 670
1
vote
1
reply
752
views
Comment: Comment: GBWT Construction Error: "Sources X and Y both have node Z" When Building GBZ fr
3 months ago by Jouni Sirén ▴ 670
1
vote
1
reply
752
views
Answer: Answer: GBWT Construction Error: "Sources X and Y both have node Z" When Building GBZ fr
3 months ago by Jouni Sirén ▴ 670
2
votes
1
reply
586
views
Answer: Answer: How do I figure out pangenome location of hg38 coordinates?
3 months ago by Jouni Sirén ▴ 670
2
votes
0
replies
423
views
Answer: Answer: Query Regarding Missing Sample Paths in Graph-Based Pangenome Construction
3 months ago by Jouni Sirén ▴ 670
0
votes
1
reply
630
views
Comment: Comment: Whether personalized pangenome considers allele frequency
4 months ago by Jouni Sirén ▴ 670
0
votes
1
reply
630
views
Answer: Answer: Whether personalized pangenome considers allele frequency
4 months ago by Jouni Sirén ▴ 670
0
votes
1
reply
442
views
Comment: Comment: Unexpected behavior of `vg surject`
4 months ago by Jouni Sirén ▴ 670
1
vote
1
reply
898
views
Comment: Comment: Parameter Settings for Haplotype-Aware Aligner
6 months ago by Jouni Sirén ▴ 670
3
votes
1
reply
898
views
Answer: Answer: Parameter Settings for Haplotype-Aware Aligner
6 months ago by Jouni Sirén ▴ 670
2
votes
0
replies
502
views
Answer: Answer: Gam format specification
6 months ago by Jouni Sirén ▴ 670
0
votes
0
replies
1.3k
views
Comment: Comment: Question about variant calling method using pangenome-graph
7 months ago by Jouni Sirén ▴ 670
3
votes
1
reply
979
views
Answer: Answer: Query about vg (and vg giraffe) for pangenome creation and VC
8 months ago by Jouni Sirén ▴ 670
2
votes
0
replies
736
views
Answer: Answer: which haplotypes were saved in .gbz file?
9 months ago by Jouni Sirén ▴ 670
1
vote
1
reply
1.3k
views
Comment: Comment: What path list should be used to surject GAM to GRCh38/CHM13 reference genome
12 months ago by Jouni Sirén ▴ 670
2
votes
1
reply
1.3k
views
Answer: Answer: What path list should be used to surject GAM to GRCh38/CHM13 reference genome
12 months ago by Jouni Sirén ▴ 670
3
votes
1
reply
958
views
Answer: Answer: vg autoindex seems stuck after a week of running
13 months ago by Jouni Sirén ▴ 670
2
votes
1
reply
811
views
Answer: Answer: How to parallelize running vg autoindex to create graph references from VCFs wit
15 months ago by Jouni Sirén ▴ 670
2
votes
1
reply
951
views
Answer: Answer: Regarding the node length requirements for using gfa files in vg giraffe
17 months ago by Jouni Sirén ▴ 670
0
votes
1
reply
2.3k
views
Comment: Comment: build error with vg tools
23 months ago by Jouni Sirén ▴ 670
1
vote
0
replies
2.0k
views
Comment: Comment: warning[vg::Watchdog]
24 months ago by Jouni Sirén ▴ 670
1
vote
0
replies
1.5k
views
Answer: Answer: Constructing a vg graph from MSA with a large number of sequences
3.4 years ago by Jouni Sirén ▴ 670
1
vote
0
replies
1.5k
views
Answer: Answer: vg tools, I ran vg autoindex -w giraffe and use splited vcf file (multi vcf file
3.5 years ago by Jouni Sirén ▴ 670
2
votes
1
reply
1.6k
views
Answer: Answer: I ran autoindex giraffe of vg tools , Step : Constructing a greedy path cover GB
3.5 years ago by Jouni Sirén ▴ 670
1
vote
0
replies
2.8k
views
Comment: Comment: Creating a variation graph for Giraffe alignment from assemblies
3.8 years ago by Jouni Sirén ▴ 670
3
votes
1
reply
2.8k
views
Answer: Answer: Creating a variation graph for Giraffe alignment from assemblies
3.9 years ago by Jouni Sirén ▴ 670
2
votes
1
reply
1.4k
views
Answer: Answer: VG Installation with Ubuntu
3.9 years ago by Jouni Sirén ▴ 670
2
votes
0
replies
2.9k
views
Answer: Answer: How to run vg giraffe for sv genotyping?
3.9 years ago by Jouni Sirén ▴ 670
0
votes
1
reply
1.7k
views
Comment: Comment: Issue with memory and the gcsa index in toil-vg
4.0 years ago by Jouni Sirén ▴ 670
1
vote
0
replies
1.5k
views
Answer: A: vg index memory allocation
4.5 years ago by Jouni Sirén ▴ 670
0
votes
2
replies
1.7k
views
Answer: A: In 'vg construct', is it possible to have the variant paths be labeled with sam
4.5 years ago by Jouni Sirén ▴ 670
2
votes
0
replies
2.0k
views
Answer: A: Issues calling variants with vg when using other tools upstream
4.5 years ago by Jouni Sirén ▴ 670
1
vote
0
replies
1.9k
views
Answer: A: vg gam file statistics: how many reads are mapped
4.6 years ago by Jouni Sirén ▴ 670
1
vote
0
replies
2.1k
views
Answer: A: vg path associated with sample name
4.6 years ago by Jouni Sirén ▴ 670
3
votes
1
reply
1.1k
views
Answer: A: Best way to obtain reference and non-reference k-mer
4.9 years ago by Jouni Sirén ▴ 670
2
votes
1
reply
1.5k
views
Answer: A: Vg gamsort temporary folder
4.9 years ago by Jouni Sirén ▴ 670
2
votes
0
replies
1.9k
views
Answer: A: Extract linear representation of paths in VG graph
5.2 years ago by Jouni Sirén ▴ 670
0
votes
0
replies
1.6k
views
Comment: C: More haplotype threads than expected
5.4 years ago by Jouni Sirén ▴ 670
3
votes
0
replies
1.6k
views
Answer: A: Error in vg : vg Assertion `reference_for.count(fasta_contig)' failed.
5.5 years ago by Jouni Sirén ▴ 670
2
votes
0
replies
1.5k
views
Answer: A: How much memory do we need for pruning a variation graph of a chromosome?
5.7 years ago by Jouni Sirén ▴ 670
44 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6