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Comment: Comment: Factors affecting the size of a structural variant
17 months ago by tacrolimus ▴ 140
0
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0
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1.1k
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Comment: Comment: Factors affecting the size of a structural variant
17 months ago by tacrolimus ▴ 140
9
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5
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1.1k
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Factors affecting the size of a structural variant
CNV SV
17 months ago by tacrolimus ▴ 140
4
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0
replies
1.1k
views
Answer: Answer: Factors affecting the size of a structural variant
17 months ago by tacrolimus ▴ 140
1
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0
replies
555
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Forum: Penetrance versus heritability
penetrance heritability
21 months ago by tacrolimus ▴ 140
1
vote
0
replies
511
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Meta-analysis of rare variant SAIGE-GENE output for WGS data
meta-analysis rare SAIGE variant
23 months ago by tacrolimus ▴ 140
0
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1
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939
views
Comment: Comment: Counting the specific number of a type of variant per sample in a multi-sample
23 months ago by tacrolimus ▴ 140
5
votes
3
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939
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Counting the specific number of a type of variant per sample in a multi-sample VCF
bcftools VCF
updated 23 months ago by 164k • written 23 months ago by ▴ 140
0
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0
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707
views
Comment: Comment: Ascertaining whether polygenic risk score is statistically independent to a mono
2.1 years ago by tacrolimus ▴ 140
4
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2
replies
707
views
Ascertaining whether polygenic risk score is statistically independent to a monogenic risk
polygenic score PRS risk SAIGE
2.1 years ago by tacrolimus ▴ 140
3
votes
1
reply
679
views
Pathway analysis using rare-variant SKAT-O summary statistics
variant rare pathway analysis R
updated 2.2 years ago by 4.7k • written 2.2 years ago by ▴ 140
0
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0
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906
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Comment: Comment: Basic PRS question
2.2 years ago by tacrolimus ▴ 140
0
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1
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906
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Comment: Comment: Basic PRS question
2.2 years ago by tacrolimus ▴ 140
0
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4
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906
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Basic PRS question
PRS
2.2 years ago by tacrolimus ▴ 140
0
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0
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763
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Running a validated polygenic risk score (PRS) on a new dataset using VCF/PGEN files (in the 100K genomes project)
PRS polygenic risk score
2.3 years ago by tacrolimus ▴ 140
0
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2
replies
1.9k
views
Counting allele counts/frequencies from a vcf file with both cases and controls
bcftools allele count vep
updated 2.9 years ago by • 0 • written 4.3 years ago by ▴ 140
0
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0
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675
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Answer: Answer: Ancient DNA Analysis Fastq to vcf
2.9 years ago by tacrolimus ▴ 140
0
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0
replies
635
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Power calculation for a collapsing rare variant analysis
calculation SAIGE power rare variant collapsing test
2.9 years ago by tacrolimus ▴ 140
0
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0
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1.5k
views
Comment: Comment: Creating a per sample file from multi-sample vcf
3.1 years ago by tacrolimus ▴ 140
0
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1
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1.5k
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Comment: Comment: Creating a per sample file from multi-sample vcf
3.1 years ago by tacrolimus ▴ 140
0
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1
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1.5k
views
Comment: Comment: Creating a per sample file from multi-sample vcf
3.1 years ago by tacrolimus ▴ 140
4
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5
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1.5k
views
Creating a per sample file from multi-sample vcf
bcftools SNV SNP vcftools vcf
3.1 years ago by tacrolimus ▴ 140
4
votes
1
reply
705
views
Pulling out "alts" from a multisample vcf by sample ID - bcftools syntax question
bcftools vcf
3.2 years ago by tacrolimus ▴ 140
3
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0
replies
705
views
Answer: Answer: Pulling out "alts" from a multisample vcf by sample ID - bcftools syntax questio
3.2 years ago by tacrolimus ▴ 140
0
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0
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491
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Bioinformatic interrogation of non-coding variants in gVCFs
VCF gVCF non-coding
3.4 years ago by tacrolimus ▴ 140
0
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0
replies
503
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Best way of visualising genetic variation for publication in a gene with many exons
graphs snv lollipop snp Visualisation
3.4 years ago by tacrolimus ▴ 140
0
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0
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1.2k
views
Comment: Comment: Count number of occurrences an annotation in a multisample vcf split into multip
3.4 years ago by tacrolimus ▴ 140
4
votes
2
replies
1.2k
views
Count number of occurrences an annotation in a multisample vcf split into multiple chunks
bcftools vcf annotation
3.4 years ago by tacrolimus ▴ 140
0
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0
replies
1.3k
views
Split Y-Axis of a manhattan plot in qqman (using R)
manhattan R genomics
3.5 years ago by tacrolimus ▴ 140
0
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0
replies
2.0k
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Comment: C: Extract samples with alternative genotype from a multi-sample VCF
4.1 years ago by tacrolimus ▴ 140
0
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0
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2.0k
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Comment: C: Extract samples with alternative genotype from a multi-sample VCF
4.1 years ago by tacrolimus ▴ 140
0
votes
4
replies
2.0k
views
Extract samples with alternative genotype from a multi-sample VCF
vcf bcftools vep
updated 4.1 years ago by ★ 1.2k • written 4.1 years ago by ▴ 140
0
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0
replies
1.1k
views
Adding SNP/Gene labels to a qqplot using qqman
qqman qqplot gwas R
4.1 years ago by tacrolimus ▴ 140
0
votes
0
replies
1.3k
views
locuszoom on a HPC - LD could not be computed for SNP
locuszoom HPC bash GWAS
4.1 years ago by tacrolimus ▴ 140
0
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0
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2.0k
views
Comment: C: Filtering large VCFs by allele freqency using bcftools split-vep function
4.1 years ago by tacrolimus ▴ 140
1
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0
replies
1.8k
views
Comment: C: Finding unique variants by sample ID in a multisample vcf
4.2 years ago by tacrolimus ▴ 140
6
votes
2
replies
1.8k
views
Finding unique variants by sample ID in a multisample vcf
bcftools vcf SNP vep
updated 4.2 years ago by ▴ 840 • written 4.2 years ago by ▴ 140
0
votes
0
replies
819
views
Leveraging phenotype data in rare variant and GWAS analysis
SNP genome phenotype GWAS rare variant
4.4 years ago by tacrolimus ▴ 140
0
votes
0
replies
2.5k
views
Comment: C: Faster filtering of vcfs using split-vep over filter_vep
updated 4.8 years ago by 16k • written 4.8 years ago by ▴ 140
0
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1
reply
1.6k
views
Answer: A: Extract several columns from a VCF file
updated 4.8 years ago by 44k • written 4.8 years ago by ▴ 140
0
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0
replies
1.6k
views
Comment: A: Extract several columns from a VCF file
4.8 years ago by tacrolimus ▴ 140
1
vote
2
replies
2.5k
views
Faster filtering of vcfs using split-vep over filter_vep
VEP bcftools split-vep vcf
4.8 years ago by tacrolimus ▴ 140
3
votes
12
replies
1.6k
views
BCFTOOLS: One-liner to get individuals with more than one heterozygote call in a region
bcftools
4.9 years ago by tacrolimus ▴ 140
0
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0
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1.6k
views
Comment: C: BCFTOOLS: One-liner to get individuals with more than one heterozygote call in a
4.9 years ago by tacrolimus ▴ 140
0
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1
reply
1.6k
views
Comment: C: BCFTOOLS: One-liner to get individuals with more than one heterozygote call in a
4.9 years ago by tacrolimus ▴ 140
0
votes
0
replies
1.6k
views
Comment: C: BCFTOOLS: One-liner to get individuals with more than one heterozygote call in a
4.9 years ago by tacrolimus ▴ 140
0
votes
1
reply
1.6k
views
Comment: C: BCFTOOLS: One-liner to get individuals with more than one heterozygote call in a
4.9 years ago by tacrolimus ▴ 140
0
votes
0
replies
1.3k
views
Comment: C: Creating a genotype matrix for BeviMed
4.9 years ago by tacrolimus ▴ 140
3
votes
2
replies
1.3k
views
Creating a genotype matrix for BeviMed
snp genome Bayesian
updated 18 months ago by 44k • written 4.9 years ago by ▴ 140
2
votes
2
replies
2.0k
views
Filtering large VCFs by allele freqency using bcftools split-vep function
bcftools vep split-vep
5.1 years ago by tacrolimus ▴ 140
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