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GenVisR to generate waterfall plot with clinical data: Waterfall plot is not annotating the clinical data
Mutation GenVisR waterfall-plot oncoplot r
updated 5 months ago by 44k • written 5 months ago by ▴ 10
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1
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530
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Comment: Comment: featureCounts output file chromosome identifier issue
9 months ago by tanbiswas6 ▴ 10
1
vote
3
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530
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featureCounts output file chromosome identifier issue
featureCounts RNASeq trnascriptome WTS sequencing
updated 9 months ago by 147k • written 9 months ago by ▴ 10
0
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0
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873
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Comment: Comment: How to identify biallelic mutations called using WES data?
9 months ago by tanbiswas6 ▴ 10
0
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1
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873
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Comment: Comment: How to identify biallelic mutations called using WES data?
9 months ago by tanbiswas6 ▴ 10
2
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5
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873
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How to identify biallelic mutations called using WES data?
mutect2 gatk wes mutation
9 months ago by tanbiswas6 ▴ 10
1
vote
1
reply
1.0k
views
How to calculate tumor mutation burden (TMB)?
TMB Mutations WES Sequencing Mutationrate
updated 22 months ago by ★ 3.0k • written 22 months ago by ▴ 10
0
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1
reply
895
views
vcf2maf errors: Chr isn't numeric in subtraction
VEP vcf2maf variants VCF
23 months ago by tanbiswas6 ▴ 10
2
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7
replies
2.3k
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FASTQC Per base sequence content failed WES
DNA-seq QC WES FASTQC
updated 23 months ago by 147k • written 23 months ago by ▴ 10
0
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2
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2.3k
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Comment: Comment: FASTQC Per base sequence content failed WES
23 months ago by tanbiswas6 ▴ 10
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0
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2.3k
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Comment: Comment: FASTQC Per base sequence content failed WES
23 months ago by tanbiswas6 ▴ 10
0
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0
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1.0k
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Copy number axis in sequenza result files are not fully resolved.
CNVs sequenza
4.4 years ago by tanbiswas6 ▴ 10
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0
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4.8k
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Comment: C: CNVKit noisy scatter plot
4.5 years ago by tanbiswas6 ▴ 10
0
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0
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4.8k
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Comment: C: CNVKit noisy scatter plot
4.5 years ago by tanbiswas6 ▴ 10
0
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1
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4.8k
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Comment: C: CNVKit noisy scatter plot
4.5 years ago by tanbiswas6 ▴ 10
2
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13
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4.8k
views
CNVKit noisy scatter plot
CNV CNVkit copy number profile CNV on WES data
updated 4.5 years ago by ▴ 190 • written 4.5 years ago by ▴ 10
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6.0k
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Comment: C: Whole Exome CNV tools
4.5 years ago by tanbiswas6 ▴ 10
0
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1
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4.8k
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Comment: C: CNVKit noisy scatter plot
4.5 years ago by tanbiswas6 ▴ 10
0
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1
reply
4.8k
views
Comment: C: CNVKit noisy scatter plot
4.5 years ago by tanbiswas6 ▴ 10
0
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0
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1.5k
views
Preparing pyclone input files
vcf pyclone
updated 20 months ago by 44k • written 4.6 years ago by ▴ 10
0
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1
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1.6k
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Comment: C: CNV Profile figure
4.9 years ago by tanbiswas6 ▴ 10
1
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6
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1.6k
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CNV Profile figure
CNV Control-Freec
4.9 years ago by tanbiswas6 ▴ 10
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2
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1.2k
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Copy number profile using Control-FREEC
Control-FREEC CNV Copy number profilr
updated 5.0 years ago by 88k • written 5.0 years ago by ▴ 10
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2
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3.5k
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Answer: A: Copy number profile using VarScan
5.0 years ago by tanbiswas6 ▴ 10
1
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8
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3.5k
views
Copy number profile using VarScan
CNVs VarScan R CNV_Graph
5.0 years ago by tanbiswas6 ▴ 10
0
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0
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821
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merge segment using varscan
VarScan Merge_segments CNVs
5.1 years ago by tanbiswas6 ▴ 10
0
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0
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839
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Comment: A: Problem while calling copynumber variants using VarScan
5.1 years ago by tanbiswas6 ▴ 10
0
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2
replies
839
views
Problem while calling copynumber variants using VarScan
CNV_VarScan
5.1 years ago by tanbiswas6 ▴ 10
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