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21
votes
14
replies
11k
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Tool: trackplot: Fast and minimal dependency standalone R script to generate IGV style locus tracks from bigWig files
visualization igv ChIP-Seq R bigwigs
updated 21 months ago by 45k • written 4.3 years ago by ★ 3.2k
2
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0
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2.2k
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Answer: Answer: What are some major historic shifts in bioinformatic methodologies?
4.0 years ago by poisonAlien ★ 3.2k
0
votes
2
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6.4k
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Benefits of 150 bp reads over 100 bp reads in RNA-seq
RNA-Seq splicing hiseq4k
updated 4.3 years ago by 20 • written 9.1 years ago by ★ 3.2k
0
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1
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11k
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Comment: C: trackplot: Fast and minimal dependency standalone R script to generate IGV style
4.3 years ago by poisonAlien ★ 3.2k
0
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0
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11k
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Comment: C: trackplot: Fast and minimal dependency standalone R script to generate IGV style
4.3 years ago by poisonAlien ★ 3.2k
0
votes
0
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11k
views
Comment: C: trackplot: Fast and minimal dependency standalone R script to generate IGV style
4.3 years ago by poisonAlien ★ 3.2k
1
vote
2
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11k
views
Comment: C: trackplot: Fast and minimal dependency standalone R script to generate IGV style
4.3 years ago by poisonAlien ★ 3.2k
0
votes
1
reply
11k
views
Comment: C: trackplot: Fast and minimal dependency standalone R script to generate IGV style
4.3 years ago by poisonAlien ★ 3.2k
1
vote
1
reply
11k
views
Answer: A: ABSOLUTE to estimate tumour purity from WES data
updated 5.2 years ago by 45k • written 9.2 years ago by ★ 3.2k
0
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0
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2.4k
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Answer: A: Is there an software can handle CNV analysis without control for WES data?
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 3.2k
0
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1
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8.8k
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Comment: C: following Kallisto with DESeq2 using tximport package
updated 5.2 years ago by 45k • written 9.2 years ago by ★ 3.2k
0
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0
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7.7k
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Answer: A: micoarray analysis (affamytrix) software or tools
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 3.2k
2
votes
1
reply
43k
views
Answer: A: How to extract unique mapped results from Bowtie2 bam results?
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 3.2k
0
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1
reply
3.1k
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Comment: C: cn.mops error - Help !
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 3.2k
0
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1
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6.8k
views
Comment: C: What is mutation calling in exome sequencing?
updated 5.3 years ago by 45k • written 9.3 years ago by ★ 3.2k
0
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1
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3.0k
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Comment: C: Genome assembly is hard: the tardigrade genome.
updated 5.3 years ago by 45k • written 9.3 years ago by ★ 3.2k
0
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0
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3.7k
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Comment: C: calling variants between two strains
updated 5.3 years ago by 45k • written 9.3 years ago by ★ 3.2k
1
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1
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3.7k
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Answer: A: calling variants between two strains
updated 5.3 years ago by 45k • written 9.3 years ago by ★ 3.2k
0
votes
2
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13k
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Comment: C: How to use MutSigCV correctly
updated 5.3 years ago by 45k • written 9.4 years ago by ★ 3.2k
0
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2
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13k
views
Comment: C: How to use MutSigCV correctly
updated 5.3 years ago by 45k • written 9.4 years ago by ★ 3.2k
0
votes
1
reply
13k
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Comment: C: How to use MutSigCV correctly
updated 5.3 years ago by 45k • written 9.4 years ago by ★ 3.2k
4
votes
0
replies
7.7k
views
Answer: Answer: Is there a good manual/tutorial for TreeView?
updated 3.3 years ago by 45k • written 10.7 years ago by ★ 3.2k
3
votes
1
reply
7.1k
views
Answer: A: How to use Samtools to remove reads whose mate does not map as expected
updated 5.5 years ago by 45k • written 10.7 years ago by ★ 3.2k
3
votes
1
reply
6.9k
views
Answer: A: Comparing vcf with dbSNP
updated 5.5 years ago by 45k • written 10.8 years ago by ★ 3.2k
2
votes
0
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8.2k
views
Answer: A: Customize IGV coverage track in R
updated 5.5 years ago by 45k • written 10.8 years ago by ★ 3.2k
4
votes
2
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13k
views
Answer: A: How to use MutSigCV correctly
updated 6.5 years ago by 45k • written 9.4 years ago by ★ 3.2k
0
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0
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2.1k
views
Comment: C: Recommendation for statistics book
6.5 years ago by poisonAlien ★ 3.2k
5
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1
reply
2.4k
views
Answer: A: clonal populations in cancer samples
6.5 years ago by poisonAlien ★ 3.2k
2
votes
0
replies
14k
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Comment: C: The comparison between HISAT2 and Tophat2
updated 6.5 years ago by 45k • written 9.1 years ago by ★ 3.2k
0
votes
0
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1.9k
views
Answer: A: Finding out if non-coding transcripts from CPAT are tissue specific?
updated 6.5 years ago by 45k • written 9.1 years ago by ★ 3.2k
3
votes
1
reply
7.3k
views
Answer: A: R phangorn phylogenetic analysis from somatic mutations' binary table
updated 6.5 years ago by 45k • written 9.1 years ago by ★ 3.2k
0
votes
1
reply
1.8k
views
Answer: C: normalisation method for microarray
updated 6.5 years ago by 45k • written 9.1 years ago by ★ 3.2k
54
votes
24
replies
5.0k
views
12 follow
News: Big news from Microsoft. BASH on windows.
windows
updated 24 months ago by 45k • written 9.0 years ago by ★ 3.2k
1
vote
1
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13k
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Comment: C: TMB Tumor Mutation Burden
7.1 years ago by poisonAlien ★ 3.2k
0
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0
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2.0k
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Comment: C: How representative the solid tumor sample is to that entire tumor lesion in term
7.1 years ago by poisonAlien ★ 3.2k
0
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0
replies
1.9k
views
Comment: C: detecting mutations in cancer samples belonging to the same cancer type
7.2 years ago by poisonAlien ★ 3.2k
0
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1
reply
1.9k
views
Comment: C: detecting mutations in cancer samples belonging to the same cancer type
7.2 years ago by poisonAlien ★ 3.2k
0
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0
replies
2.9k
views
Answer: A: Software to analyse mutational signatures other than DeconstructSigs R package
7.2 years ago by poisonAlien ★ 3.2k
0
votes
1
reply
5.4k
views
Comment: C: Script for analyzing idat (illumina) microarray files with limma, any suggestion
7.2 years ago by poisonAlien ★ 3.2k
0
votes
1
reply
2.1k
views
Comment: C: Driver gene detection with SomInaClust
7.3 years ago by poisonAlien ★ 3.2k
0
votes
1
reply
2.4k
views
Answer: A: how to decide whether a mutation is driver for a specific cell line
7.4 years ago by poisonAlien ★ 3.2k
2
votes
0
replies
8.1k
views
Answer: A: Annotation of ID from TCGA gene expression data
7.5 years ago by poisonAlien ★ 3.2k
1
vote
1
reply
4.1k
views
Comment: C: Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
7.6 years ago by poisonAlien ★ 3.2k
2
votes
0
replies
1.7k
views
Answer: A: Tools to identify the non-coding RNAs
7.6 years ago by poisonAlien ★ 3.2k
1
vote
0
replies
2.2k
views
Job: Bioinformatician - Cancer Genomics, Cancer Science Institute of Singapore, NUS, Singapore.
R RNA-Seq wxs ChIP-Seq
updated 22 months ago by 45k • written 7.6 years ago by ★ 3.2k
0
votes
0
replies
2.5k
views
Comment: C: Why copy number variations of TCGA is so high
7.7 years ago by poisonAlien ★ 3.2k
0
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1
reply
2.5k
views
Comment: C: Why copy number variations of TCGA is so high
7.7 years ago by poisonAlien ★ 3.2k
0
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0
replies
5.4k
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Comment: C: ABSOLUTE MAF error
7.7 years ago by poisonAlien ★ 3.2k
0
votes
1
reply
5.4k
views
Comment: C: ABSOLUTE MAF error
7.7 years ago by poisonAlien ★ 3.2k
1
vote
1
reply
2.1k
views
Comment: C: Germline mutation list in Lung TCGA data
7.7 years ago by poisonAlien ★ 3.2k
308 results • Page 1 of 7
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