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1
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Comment: C: Are there downloadable DBs for hotspot mutations?
7.3 years ago by poisonAlien ★ 3.2k
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1
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5.1k
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Comment: C: ABSOLUTE MAF error
7.3 years ago by poisonAlien ★ 3.2k
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5.7k
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Comment: C: How to combine expression values of multiple probes for one gene?
7.3 years ago by poisonAlien ★ 3.2k
2
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5.6k
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Answer: A: How to filter mutect2 VCF output?
7.4 years ago by poisonAlien ★ 3.2k
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1
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4.0k
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Comment: C: How to programmatically download TCGA methylation beta file given a sample ID
7.4 years ago by poisonAlien ★ 3.2k
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1
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12k
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Comment: C: Where do I start with Circos plot?
7.4 years ago by poisonAlien ★ 3.2k
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1
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1.6k
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Answer: A: Find mutation rates for a set of genes
7.4 years ago by poisonAlien ★ 3.2k
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3.0k
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Comment: C: Identification of short insertions in genome
7.4 years ago by poisonAlien ★ 3.2k
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2.9k
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Answer: A: Generate phylogenetic tree from primary and metastatic tumors
7.4 years ago by poisonAlien ★ 3.2k
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1
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2.9k
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Comment: C: Generate phylogenetic tree from primary and metastatic tumors
7.4 years ago by poisonAlien ★ 3.2k
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1
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2.9k
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Answer: A: Generate phylogenetic tree from primary and metastatic tumors
7.4 years ago by poisonAlien ★ 3.2k
2
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1.8k
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Answer: A: Broad rules of thumb on # of variations
7.4 years ago by poisonAlien ★ 3.2k
2
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1
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14k
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Answer: A: How to annotate only selected genes on a heatmap
7.4 years ago by poisonAlien ★ 3.2k
2
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1
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1.3k
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Comment: C: all the peaks of MACS2 BED file starting at position 0
7.4 years ago by poisonAlien ★ 3.2k
1
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1
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5.0k
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Comment: C: Which peaks in the bed file output by MACS2 are significant ?
7.4 years ago by poisonAlien ★ 3.2k
1
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1
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5.0k
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Comment: C: Which peaks in the bed file output by MACS2 are significant ?
7.4 years ago by poisonAlien ★ 3.2k
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5.7k
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Comment: C: Calculate Variant Allele Frequency in a TCGA dataset
7.5 years ago by poisonAlien ★ 3.2k
1
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3.1k
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Comment: C: Are there NGS-based CNV callers that utilise allele frequency?
7.5 years ago by poisonAlien ★ 3.2k
0
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1
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3.7k
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Comment: C: How to understand somatic mutation of ICGC data
7.5 years ago by poisonAlien ★ 3.2k
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1.7k
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Comment: C: Could you suggest me a proper feature selection method for mixed type variable d
7.6 years ago by poisonAlien ★ 3.2k
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1
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2.4k
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Comment: C: Cancer Data for process
7.6 years ago by poisonAlien ★ 3.2k
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1
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2.1k
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Comment: C: select DE genes
7.6 years ago by poisonAlien ★ 3.2k
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1
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2.6k
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Answer: A: Loss of heterozygosity analysis from SNV files
7.6 years ago by poisonAlien ★ 3.2k
1
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4.5k
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Comment: C: Extract mutations for a specific gene from a vcf file
7.6 years ago by poisonAlien ★ 3.2k
1
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1
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2.7k
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Answer: A: finding normal and cancer samples from TCGA expression data
7.7 years ago by poisonAlien ★ 3.2k
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5.8k
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Answer: A: estimating tumor purity and ploidy and CNV
7.7 years ago by poisonAlien ★ 3.2k
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1
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1.9k
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Comment: C: Very large FPKM from cuffdiff that doesn't match read counts
7.8 years ago by poisonAlien ★ 3.2k
1
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1
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3.2k
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Comment: C: GEO submission for RNA-seq
7.8 years ago by poisonAlien ★ 3.2k
2
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3.0k
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Comment: C: PCA from kallisto output
7.8 years ago by poisonAlien ★ 3.2k
1
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3.1k
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Comment: C: tools to calculate Exac population specific frequency
7.9 years ago by poisonAlien ★ 3.2k
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0
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15k
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Comment: C: HISAT2 or Tophat2
7.9 years ago by poisonAlien ★ 3.2k
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0
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1.8k
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Comment: C: Is it normal that there are more non-synonymous SNPs Than synonymous SNPs in mou
7.9 years ago by poisonAlien ★ 3.2k
11
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3
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15k
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Answer: A: HISAT2 or Tophat2
7.9 years ago by poisonAlien ★ 3.2k
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2.4k
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Comment: C: Can I use exome sequencing data from cancer patient's blood to call germline var
7.9 years ago by poisonAlien ★ 3.2k
1
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2
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2.4k
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Answer: A: Can I use exome sequencing data from cancer patient's blood to call germline var
7.9 years ago by poisonAlien ★ 3.2k
3
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1
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2.7k
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Answer: A: MutSigCV output has p-value of 0
7.9 years ago by poisonAlien ★ 3.2k
1
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1
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2.8k
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Answer: A: differential gene expression analysis
7.9 years ago by poisonAlien ★ 3.2k
1
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0
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9.6k
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Comment: C: best criteria to find DE genes in RNA-seq analysis
7.9 years ago by poisonAlien ★ 3.2k
4
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0
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5.5k
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Comment: C: Example of how bioinformaticians can publish in Scientific Reports (by nature pu
7.9 years ago by poisonAlien ★ 3.2k
3
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0
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9.8k
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Comment: C: In YOUR personal opinion, who are the top 5 bioinformatics researchers in NGS in
7.9 years ago by poisonAlien ★ 3.2k
2
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2.8k
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Comment: C: differential gene expression analysis
7.9 years ago by poisonAlien ★ 3.2k
1
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3.0k
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Answer: A: Annovar Output column "AAChange.knowngene" gives different values
7.9 years ago by poisonAlien ★ 3.2k
1
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0
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2.3k
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Answer: A: Germline mutation in cancer
7.9 years ago by poisonAlien ★ 3.2k
0
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1
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4.4k
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Comment: C: Data repository for Whole Exome Sequencing
7.9 years ago by poisonAlien ★ 3.2k
0
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1
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3.2k
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Comment: C: R: How to loop to extract all sequences within specific positions?
7.9 years ago by poisonAlien ★ 3.2k
1
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0
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3.2k
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Comment: C: TCGA data analysis tools for non-computational biologists
8.0 years ago by poisonAlien ★ 3.2k
1
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0
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3.8k
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Comment: C: Resources to learn htslib and C/C++
8.0 years ago by poisonAlien ★ 3.2k
1
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0
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4.1k
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Answer: A: MCF-7 Cell Line DNA Sequence Data
8.0 years ago by poisonAlien ★ 3.2k
0
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0
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2.2k
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Answer: A: Normalizing with RMA and filtering with mas5calls (affymetrix arrays)
8.0 years ago by poisonAlien ★ 3.2k
0
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0
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1.7k
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Comment: C: Why less DE for non replicates
8.0 years ago by poisonAlien ★ 3.2k
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