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Comment: C: How to determine whether a gene is present or absent?
10.0 years ago by poisonAlien ★ 3.2k
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0
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2.4k
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Comment: Comment: Somatic Sniper install
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 3.2k
1
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0
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4.3k
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Comment: C: Problem with pairwiseAlignment in R
10.0 years ago by poisonAlien ★ 3.2k
1
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0
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2.1k
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Answer: A: Identify significantly mutated genes in mouse cancer genome
10.0 years ago by poisonAlien ★ 3.2k
0
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0
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14k
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Comment: C: Tutorial (How to analyze) on Whole Exome sequencing. Common Errors. Best Practic
10.1 years ago by poisonAlien ★ 3.2k
0
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0
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2.6k
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Answer: Answer: NGS CNVtools with no controls
updated 2.8 years ago by 44k • written 10.1 years ago by ★ 3.2k
0
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1
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25k
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Comment: Comment: TCGA RNA-Seq Data: RSEM and RPKM
updated 3.6 years ago by 44k • written 10.1 years ago by ★ 3.2k
10
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1
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3.8k
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Answer: Answer: Next Generation Sequencing
updated 2.8 years ago by 44k • written 10.1 years ago by ★ 3.2k
3
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1
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25k
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Answer: Answer: TCGA RNA-Seq Data: RSEM and RPKM
updated 3.6 years ago by 44k • written 10.1 years ago by ★ 3.2k
0
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0
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3.4k
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Comment: Comment: number of .bam reads mapping to genes in gff format
updated 2.8 years ago by 44k • written 10.1 years ago by ★ 3.2k
0
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0
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3.5k
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Comment: C: How to get an 'average' gene expression levels of bilological replicates?
10.1 years ago by poisonAlien ★ 3.2k
0
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0
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8.7k
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Comment: Comment: Curious about gene fusion in exome seuquencing data.
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 3.2k
1
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1
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3.4k
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Comment: Comment: Problem generating VCFs from MuTect variant caller
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 3.2k
3
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1
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14k
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Answer: Answer: SNPs only output from bcftools
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 3.2k
0
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0
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3.4k
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Comment: Comment: Biostars based Q&A for Bioconductor: http://support.bioconductor.org
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 3.2k
0
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0
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6.5k
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Answer: Answer: sciClone input, output and parameters
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 3.2k
0
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0
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3.0k
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Comment: C: comparing RNA-seq count data from two different sources
10.2 years ago by poisonAlien ★ 3.2k
1
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2
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3.0k
views
comparing RNA-seq count data from two different sources
read-counts DESeq RNA-Seq
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 3.2k
1
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1
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4.9k
views
Comment: Comment: Can VarScan be called with the Target kit bed files to emit more high confidence
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 3.2k
0
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1
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2.3k
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Answer: Answer: Number of genes expressed in a tissue (in humans)
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 3.2k
5
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1
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2.0k
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Answer: A: Is there any better method to find significant SNVs ?
10.2 years ago by poisonAlien ★ 3.2k
1
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0
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20k
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Comment: Comment: What are good settings for filtering VCF files?
updated 2.9 years ago by 44k • written 10.3 years ago by ★ 3.2k
0
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0
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6.0k
views
Comment: Comment: Extract coverage per feature from a bam and bed to a file
updated 2.9 years ago by 44k • written 10.3 years ago by ★ 3.2k
0
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0
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5.4k
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Answer: A: Bam to nucleotide frequencies
10.3 years ago by poisonAlien ★ 3.2k
2
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1
reply
8.3k
views
Answer: Answer: Error while converting SYMBOLS to ENTREZID - Bioconductor
updated 2.9 years ago by 44k • written 10.3 years ago by ★ 3.2k
1
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0
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20k
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Comment: Comment: How to convert Illumina probe expression data into gene expression data?
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 3.2k
5
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1
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20k
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Answer: Answer: How to convert Illumina probe expression data into gene expression data?
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 3.2k
4
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0
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14k
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Answer: A: convert bed filr to fasta file
10.3 years ago by poisonAlien ★ 3.2k
1
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1
reply
8.3k
views
Comment: Comment: Identifying false positives in mutect output
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 3.2k
1
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1
reply
12k
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Answer: Answer: problems with MAF for MutSigCV (vcf2maf)
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 3.2k
0
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1
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2.6k
views
Answer: A: what is the meaming of "FATAL ERROR:No MM probe for probe with id" using affymet
10.3 years ago by poisonAlien ★ 3.2k
1
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0
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4.8k
views
Comment: Comment: Python and SNP Databases, how?
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 3.2k
1
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1
reply
4.8k
views
Comment: Comment: Python and SNP Databases, how?
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 3.2k
0
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1
reply
5.0k
views
Comment: Comment: Music Analysis Workflow
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 3.2k
0
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1
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3.3k
views
Answer: A: varscan copynumber producing highly variable data
10.4 years ago by poisonAlien ★ 3.2k
0
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0
replies
10k
views
Answer: A: Looking for a tool to do GO enrichment analysis with BLAST2GO output(s)
10.4 years ago by poisonAlien ★ 3.2k
0
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1
reply
5.3k
views
Comment: Comment: Obtaining promoter sequences with biomaRt R package
updated 3.0 years ago by 44k • written 10.4 years ago by ★ 3.2k
1
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0
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6.5k
views
Comment: Comment: Convert paired end bam file into bed of fragments
updated 3.0 years ago by 44k • written 10.4 years ago by ★ 3.2k
0
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0
replies
1.4k
views
bassovac installation problem
somatic-caller bassovac
updated 3.0 years ago by 44k • written 10.4 years ago by ★ 3.2k
3
votes
1
reply
8.6k
views
Answer: Answer: difficulty with opening Affymetrix cel files
updated 3.0 years ago by 44k • written 10.4 years ago by ★ 3.2k
2
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0
replies
12k
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Comment: C: Map gene name to gene ID
10.4 years ago by poisonAlien ★ 3.2k
4
votes
1
reply
12k
views
Answer: Answer: Map gene name to gene ID
updated 3.0 years ago by 44k • written 10.4 years ago by ★ 3.2k
0
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2
replies
2.6k
views
mergeSegments.pl varscan confusion !
varScan2 mergeSegments perl arm_sizes
updated 3.2 years ago by 44k • written 10.6 years ago by ★ 3.2k
2
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0
replies
4.2k
views
Comment: Comment: Differentially expressed genes from RPKM
updated 3.0 years ago by 44k • written 10.4 years ago by ★ 3.2k
0
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0
replies
6.2k
views
Comment: Comment: Identifying the tumor clones and subclones with VAF from VarScan2
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 3.2k
1
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1
reply
1.6k
views
Answer: C: Does anyone know what Large Deletion when doing CNV detection is?
10.4 years ago by poisonAlien ★ 3.2k
4
votes
0
replies
15k
views
Comment: Comment: Anyone Has A Working Example On How To Run BROAD's ABSOLUTE On Exome Sequencing
updated 3.0 years ago by 44k • written 10.4 years ago by ★ 3.2k
0
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1
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15k
views
Comment: C: Anyone Has A Working Example On How To Run BROAD's ABSOLUTE On Exome Sequencing
10.4 years ago by poisonAlien ★ 3.2k
4
votes
5
replies
2.9k
views
cn.mops error - Help !
r-bioconductor cn.mops exome-seq GRanges
updated 3.2 years ago by 44k • written 10.6 years ago by ★ 3.2k
2
votes
0
replies
3.1k
views
Answer: Answer: Get all RefSeq transcripts from hg18
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 3.2k
308 results • Page 6 of 7
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