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Comment: Comment: Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
9 months ago by blackadder ▴ 30
0
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2
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401
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Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
Python Snakemake
9 months ago by blackadder ▴ 30
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0
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1.1k
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Comment: Comment: Problematic fastq files...How can we trust them?
12 months ago by blackadder ▴ 30
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2
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1.1k
views
Comment: Comment: Problematic fastq files...How can we trust them?
12 months ago by blackadder ▴ 30
12
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6
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1.1k
views
Problematic fastq files...How can we trust them?
fastq
12 months ago by blackadder ▴ 30
0
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0
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653
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Comment: Comment: BBDuk error: with these 4 lines....
12 months ago by blackadder ▴ 30
6
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3
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653
views
BBDuk error: with these 4 lines....
BBDUK trimming java
12 months ago by blackadder ▴ 30
3
votes
8
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1.4k
views
Best command line tool for downloading sequencing reads
enaBrowserTools reads Fasterq-dump sequencing
updated 13 months ago by 85k • written 13 months ago by ▴ 30
0
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0
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1.4k
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Comment: Comment: Best command line tool for downloading sequencing reads
13 months ago by blackadder ▴ 30
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0
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1.4k
views
Comment: Comment: Best command line tool for downloading sequencing reads
13 months ago by blackadder ▴ 30
0
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1
reply
1.4k
views
Comment: Comment: Best command line tool for downloading sequencing reads
13 months ago by blackadder ▴ 30
1
vote
0
replies
460
views
Snakemake cluster status script for qsub
snakemake cluster
updated 17 months ago by 44k • written 17 months ago by ▴ 30
0
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1
reply
732
views
Snakemake benchmark error
snakemake benchmark
updated 22 months ago by 22k • written 22 months ago by ▴ 30
4
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5
replies
1.0k
views
Get middle part of a url
Unix bash
updated 2.4 years ago by 21k • written 2.4 years ago by ▴ 30
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0
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1.0k
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Comment: Comment: Get middle part of a url
2.4 years ago by blackadder ▴ 30
0
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2
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1.0k
views
Comment: Comment: Get middle part of a url
2.4 years ago by blackadder ▴ 30
0
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0
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1.2k
views
Comment: Comment: Snakemake cluster execution error
2.4 years ago by blackadder ▴ 30
0
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3
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1.2k
views
Snakemake cluster execution error
snakemake cluster conda
updated 2.4 years ago by 44k • written 2.4 years ago by ▴ 30
0
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0
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953
views
Comment: Comment: Get bulk ftp links from ENA
2.4 years ago by blackadder ▴ 30
0
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1
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953
views
Comment: Comment: Get bulk ftp links from ENA
2.4 years ago by blackadder ▴ 30
2
votes
5
replies
953
views
Get bulk ftp links from ENA
ENA ftp assembly fasta
2.4 years ago by blackadder ▴ 30
0
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1
reply
2.0k
views
Comment: Comment: How to remove everything before a specific character in a column
2.6 years ago by blackadder ▴ 30
0
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1
reply
2.0k
views
Comment: Comment: How to remove everything before a specific character in a column
2.6 years ago by blackadder ▴ 30
8
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11
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2.0k
views
How to remove everything before a specific character in a column
unix bash awk sed
updated 2.6 years ago by 147k • written 2.6 years ago by ▴ 30
0
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0
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2.0k
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Comment: Comment: How to remove everything before a specific character in a column
2.6 years ago by blackadder ▴ 30
0
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0
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2.0k
views
Comment: Comment: How to remove everything before a specific character in a column
2.6 years ago by blackadder ▴ 30
0
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1
reply
1.8k
views
Comment: Comment: How to match 2 columns from 2 different tsv files?
2.6 years ago by blackadder ▴ 30
0
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1
reply
1.8k
views
Comment: Comment: How to match 2 columns from 2 different tsv files?
updated 2.6 years ago by 44k • written 2.6 years ago by ▴ 30
0
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1
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1.8k
views
Comment: Comment: How to match 2 columns from 2 different tsv files?
2.6 years ago by blackadder ▴ 30
4
votes
10
replies
1.8k
views
How to match 2 columns from 2 different tsv files?
bash unix pattern-matching
updated 2.6 years ago by 44k • written 2.6 years ago by ▴ 30
0
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0
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1.1k
views
Comment: Comment: Can I execute a snakemake rule only once?
2.8 years ago by blackadder ▴ 30
3
votes
2
replies
1.1k
views
Can I execute a snakemake rule only once?
Snakemake GTDB-TK Kraken2
2.8 years ago by blackadder ▴ 30
4
votes
11
replies
5.0k
views
Is it possible to pass command line arguments to python script in snakemake?
snakemake python
updated 2.4 years ago by • 0 • written 2.9 years ago by ▴ 30
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0
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5.0k
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Comment: Comment: Is it possible to pass command line arguments to python script in snakemake?
2.9 years ago by blackadder ▴ 30
0
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1
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5.0k
views
Comment: Comment: Is it possible to pass command line arguments to python script in snakemake?
2.9 years ago by blackadder ▴ 30
0
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1
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5.0k
views
Comment: Comment: Is it possible to pass command line arguments to python script in snakemake?
2.9 years ago by blackadder ▴ 30
0
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0
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5.0k
views
Comment: Comment: Is it possible to pass command line arguments to python script in snakemake?
2.9 years ago by blackadder ▴ 30
3
votes
5
replies
2.5k
views
Snakemake command line arguments
Snakemake
updated 2.9 years ago by ★ 2.2k • written 2.9 years ago by ▴ 30
0
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0
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2.5k
views
Comment: Comment: Snakemake command line arguments
2.9 years ago by blackadder ▴ 30
0
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0
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2.5k
views
Comment: Comment: Snakemake command line arguments
2.9 years ago by blackadder ▴ 30
0
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0
replies
3.3k
views
Comment: Comment: Snakemake Megahit error
3.0 years ago by blackadder ▴ 30
0
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2
replies
3.3k
views
Comment: Comment: Snakemake Megahit error
3.0 years ago by blackadder ▴ 30
0
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1
reply
3.3k
views
Comment: Comment: Snakemake Megahit error
3.0 years ago by blackadder ▴ 30
0
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1
reply
3.3k
views
Comment: Comment: Snakemake Megahit error
3.0 years ago by blackadder ▴ 30
0
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0
replies
3.3k
views
Comment: Comment: Snakemake Megahit error
3.0 years ago by blackadder ▴ 30
0
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1
reply
3.3k
views
Comment: Comment: Snakemake Megahit error
3.0 years ago by blackadder ▴ 30
2
votes
17
replies
3.3k
views
Snakemake Megahit error
megahit Snakemake
3.0 years ago by blackadder ▴ 30
3
votes
1
reply
1.5k
views
How can I load numerous files from a config file in Snakemake? Is it worth it ?
Snakemake
updated 3.0 years ago by 11k • written 3.0 years ago by ▴ 30
3
votes
1
reply
1.4k
views
Error in vg : vg Assertion `reference_for.count(fasta_contig)' failed.
vg variation graph vgteam
updated 5.0 years ago by ▴ 470 • written 5.0 years ago by ▴ 30
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