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Comment: Comment: Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
16 months ago by blackadder ▴ 30
0
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2
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594
views
Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
Python Snakemake
16 months ago by blackadder ▴ 30
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0
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1.6k
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Comment: Comment: Problematic fastq files...How can we trust them?
18 months ago by blackadder ▴ 30
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2
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1.6k
views
Comment: Comment: Problematic fastq files...How can we trust them?
18 months ago by blackadder ▴ 30
12
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6
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1.6k
views
Problematic fastq files...How can we trust them?
fastq
18 months ago by blackadder ▴ 30
0
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0
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947
views
Comment: Comment: BBDuk error: with these 4 lines....
18 months ago by blackadder ▴ 30
6
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3
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947
views
BBDuk error: with these 4 lines....
BBDUK trimming java
18 months ago by blackadder ▴ 30
3
votes
8
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2.1k
views
Best command line tool for downloading sequencing reads
enaBrowserTools reads Fasterq-dump sequencing
updated 20 months ago by 88k • written 20 months ago by ▴ 30
0
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0
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2.1k
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Comment: Comment: Best command line tool for downloading sequencing reads
20 months ago by blackadder ▴ 30
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0
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2.1k
views
Comment: Comment: Best command line tool for downloading sequencing reads
20 months ago by blackadder ▴ 30
0
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1
reply
2.1k
views
Comment: Comment: Best command line tool for downloading sequencing reads
20 months ago by blackadder ▴ 30
1
vote
0
replies
580
views
Snakemake cluster status script for qsub
snakemake cluster
updated 24 months ago by 45k • written 24 months ago by ▴ 30
0
votes
1
reply
851
views
Snakemake benchmark error
snakemake benchmark
updated 2.4 years ago by 23k • written 2.4 years ago by ▴ 30
4
votes
5
replies
1.4k
views
Get middle part of a url
Unix bash
updated 3.0 years ago by 22k • written 3.0 years ago by ▴ 30
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0
replies
1.4k
views
Comment: Comment: Get middle part of a url
3.0 years ago by blackadder ▴ 30
0
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2
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1.4k
views
Comment: Comment: Get middle part of a url
3.0 years ago by blackadder ▴ 30
0
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0
replies
1.5k
views
Comment: Comment: Snakemake cluster execution error
3.0 years ago by blackadder ▴ 30
0
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3
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1.5k
views
Snakemake cluster execution error
snakemake cluster conda
updated 3.0 years ago by 45k • written 3.0 years ago by ▴ 30
0
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0
replies
1.3k
views
Comment: Comment: Get bulk ftp links from ENA
3.0 years ago by blackadder ▴ 30
0
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1
reply
1.3k
views
Comment: Comment: Get bulk ftp links from ENA
3.0 years ago by blackadder ▴ 30
2
votes
5
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1.3k
views
Get bulk ftp links from ENA
ENA ftp assembly fasta
3.0 years ago by blackadder ▴ 30
0
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1
reply
2.7k
views
Comment: Comment: How to remove everything before a specific character in a column
3.1 years ago by blackadder ▴ 30
0
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1
reply
2.7k
views
Comment: Comment: How to remove everything before a specific character in a column
3.1 years ago by blackadder ▴ 30
8
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11
replies
2.7k
views
How to remove everything before a specific character in a column
unix bash awk sed
updated 3.1 years ago by 152k • written 3.1 years ago by ▴ 30
0
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0
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2.7k
views
Comment: Comment: How to remove everything before a specific character in a column
3.1 years ago by blackadder ▴ 30
0
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0
replies
2.7k
views
Comment: Comment: How to remove everything before a specific character in a column
3.1 years ago by blackadder ▴ 30
0
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1
reply
2.3k
views
Comment: Comment: How to match 2 columns from 2 different tsv files?
3.1 years ago by blackadder ▴ 30
0
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1
reply
2.3k
views
Comment: Comment: How to match 2 columns from 2 different tsv files?
updated 3.1 years ago by 45k • written 3.1 years ago by ▴ 30
0
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1
reply
2.3k
views
Comment: Comment: How to match 2 columns from 2 different tsv files?
3.1 years ago by blackadder ▴ 30
4
votes
10
replies
2.3k
views
How to match 2 columns from 2 different tsv files?
bash unix pattern-matching
updated 3.1 years ago by 45k • written 3.1 years ago by ▴ 30
0
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0
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1.4k
views
Comment: Comment: Can I execute a snakemake rule only once?
3.4 years ago by blackadder ▴ 30
3
votes
2
replies
1.4k
views
Can I execute a snakemake rule only once?
Snakemake GTDB-TK Kraken2
3.4 years ago by blackadder ▴ 30
4
votes
11
replies
5.8k
views
Is it possible to pass command line arguments to python script in snakemake?
snakemake python
updated 3.0 years ago by • 0 • written 3.4 years ago by ▴ 30
0
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0
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5.8k
views
Comment: Comment: Is it possible to pass command line arguments to python script in snakemake?
3.4 years ago by blackadder ▴ 30
0
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1
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5.8k
views
Comment: Comment: Is it possible to pass command line arguments to python script in snakemake?
3.4 years ago by blackadder ▴ 30
0
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1
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5.8k
views
Comment: Comment: Is it possible to pass command line arguments to python script in snakemake?
3.4 years ago by blackadder ▴ 30
0
votes
0
replies
5.8k
views
Comment: Comment: Is it possible to pass command line arguments to python script in snakemake?
3.4 years ago by blackadder ▴ 30
3
votes
5
replies
3.0k
views
Snakemake command line arguments
Snakemake
updated 3.5 years ago by ★ 2.2k • written 3.5 years ago by ▴ 30
0
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0
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3.0k
views
Comment: Comment: Snakemake command line arguments
3.5 years ago by blackadder ▴ 30
0
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0
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3.0k
views
Comment: Comment: Snakemake command line arguments
3.5 years ago by blackadder ▴ 30
0
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0
replies
4.2k
views
Comment: Comment: Snakemake Megahit error
3.6 years ago by blackadder ▴ 30
0
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2
replies
4.2k
views
Comment: Comment: Snakemake Megahit error
3.6 years ago by blackadder ▴ 30
0
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1
reply
4.2k
views
Comment: Comment: Snakemake Megahit error
3.6 years ago by blackadder ▴ 30
0
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1
reply
4.2k
views
Comment: Comment: Snakemake Megahit error
3.6 years ago by blackadder ▴ 30
0
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0
replies
4.2k
views
Comment: Comment: Snakemake Megahit error
3.6 years ago by blackadder ▴ 30
0
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1
reply
4.2k
views
Comment: Comment: Snakemake Megahit error
3.6 years ago by blackadder ▴ 30
2
votes
17
replies
4.2k
views
Snakemake Megahit error
megahit Snakemake
3.6 years ago by blackadder ▴ 30
3
votes
1
reply
1.8k
views
How can I load numerous files from a config file in Snakemake? Is it worth it ?
Snakemake
updated 3.6 years ago by 11k • written 3.6 years ago by ▴ 30
3
votes
1
reply
1.6k
views
Error in vg : vg Assertion `reference_for.count(fasta_contig)' failed.
vg variation graph vgteam
updated 5.5 years ago by ▴ 670 • written 5.6 years ago by ▴ 30
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