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480
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Answer: Answer: vg call vs vg surject
6 months ago by glenn.hickey ▴ 520
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461
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Answer: Answer: vg call is time consuming
8 months ago by glenn.hickey ▴ 520
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1
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1.6k
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Answer: Answer: need interpretations for the vg call output
12 months ago by glenn.hickey ▴ 520
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1.0k
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Answer: Answer: Can I use vg tools to calculate the depth for a bed range file like with samtoo
12 months ago by glenn.hickey ▴ 520
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0
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530
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Answer: Answer: Issues while installing VG
13 months ago by glenn.hickey ▴ 520
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1.1k
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Answer: Answer: Lack of correspondance of GFA node IDs to giraffe/call node IDs
13 months ago by glenn.hickey ▴ 520
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1
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663
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Answer: Answer: vg call coverage/suppport
13 months ago by glenn.hickey ▴ 520
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1
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1.1k
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Answer: Answer: Lack of correspondance of GFA node IDs to giraffe/call node IDs
13 months ago by glenn.hickey ▴ 520
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0
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610
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Answer: Answer: How to change the output reference for vg giraffe BAM output
14 months ago by glenn.hickey ▴ 520
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0
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703
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Comment: Comment: Can vg stats -a be used on a bam file?
15 months ago by glenn.hickey ▴ 520
2
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3
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1.6k
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Answer: Answer: How to identify which genome the variations in the pan-genome graph originate fr
15 months ago by glenn.hickey ▴ 520
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1
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1.8k
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Comment: Comment: Speed up vg call ?
16 months ago by glenn.hickey ▴ 520
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1
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1.8k
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Comment: Comment: Speed up vg call ?
16 months ago by glenn.hickey ▴ 520
2
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0
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551
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Answer: Answer: Has anyone tried a combination of vg and cactus
16 months ago by glenn.hickey ▴ 520
2
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1
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1.4k
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Answer: Answer: population-level stratagy of vg call
16 months ago by glenn.hickey ▴ 520
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0
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1.4k
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Comment: Comment: vg map time consuming
16 months ago by glenn.hickey ▴ 520
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1.2k
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Answer: Answer: unable to find most of SVs in constructed graph.vg
17 months ago by glenn.hickey ▴ 520
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1
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1.2k
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Answer: Answer: unable to find most of SVs in constructed graph.vg
17 months ago by glenn.hickey ▴ 520
2
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1
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1.2k
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Answer: Answer: unable to find most of SVs in constructed graph.vg
17 months ago by glenn.hickey ▴ 520
2
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0
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1.8k
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Answer: Answer: Speed up vg call ?
21 months ago by glenn.hickey ▴ 520
1
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0
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787
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Answer: Answer: Using VG to extract path sequences/sub-sequences
21 months ago by glenn.hickey ▴ 520
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0
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806
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Answer: Answer: vg sort gam file by read name
21 months ago by glenn.hickey ▴ 520
2
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1
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3.0k
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Answer: Answer: vg augment/call - Excessively high memory usage for some chromosomes
21 months ago by glenn.hickey ▴ 520
1
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1
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2.7k
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Answer: Answer: Using VG to genotype a GAM using a graph constructed from GFA
3.2 years ago by glenn.hickey ▴ 520
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1
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1.1k
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Answer: Answer: Vg Call, not detecting SV due to soft-clipping
3.6 years ago by glenn.hickey ▴ 520
1
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1
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1.3k
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Answer: Answer: Identify coordinates from the VCF generated from Vg call
3.6 years ago by glenn.hickey ▴ 520
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0
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854
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Answer: Answer: cannot see variations on graph image
3.6 years ago by glenn.hickey ▴ 520
2
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0
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1.1k
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Answer: A: Handling of Reverse Strand in GAM file
3.9 years ago by glenn.hickey ▴ 520
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0
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1.4k
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Answer: A: empty vcf from vg call
3.9 years ago by glenn.hickey ▴ 520
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0
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1.1k
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Answer: A: Issue on vg call order of paths
3.9 years ago by glenn.hickey ▴ 520
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0
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1.3k
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Answer: A: vg call has very different variant number between xg and hg
3.9 years ago by glenn.hickey ▴ 520
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0
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1.3k
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Answer: A: Whole genome alignment graph building
4.1 years ago by glenn.hickey ▴ 520
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0
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1.4k
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Answer: A: Merge multiple vcfs vgtools
updated 4.3 years ago by 44k • written 4.3 years ago by ▴ 520
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0
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1.4k
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Answer: A: Merge multiple vcfs vgtools
4.3 years ago by glenn.hickey ▴ 520
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0
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3.5k
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Comment: C: GAF format from vg
4.3 years ago by glenn.hickey ▴ 520
2
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1
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2.4k
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Answer: A: Vg call in a specific region
4.4 years ago by glenn.hickey ▴ 520
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0
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1.3k
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Answer: A: vg deconstruct with path sizes
4.4 years ago by glenn.hickey ▴ 520
0
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0
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791
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Answer: A: How can i use several samples of resequencing data to get a visualize paths
4.4 years ago by glenn.hickey ▴ 520
2
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1
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1.9k
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Answer: A: Converting gam to gaf
4.4 years ago by glenn.hickey ▴ 520
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0
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1.1k
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Answer: A: vg map with long assembled contigs
4.4 years ago by glenn.hickey ▴ 520
1
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0
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2.1k
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Comment: A: passing a third-party GFA to vg tools
4.4 years ago by glenn.hickey ▴ 520
2
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1
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1.5k
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Answer: A: Merging .gam files
4.4 years ago by glenn.hickey ▴ 520
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0
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929
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Answer: A: vg sv calling
4.7 years ago by glenn.hickey ▴ 520
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0
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1.7k
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Answer: A: vg docker image
4.7 years ago by glenn.hickey ▴ 520
0
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0
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948
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Answer: A: How do I deal with duplicate reads when using vg to analyse WGS data?
4.8 years ago by glenn.hickey ▴ 520
1
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1
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2.0k
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Answer: A: Segmentation fault (core dumped) during vg surject
4.8 years ago by glenn.hickey ▴ 520
1
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0
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818
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Answer: A: Edit distance of an alignment
4.8 years ago by glenn.hickey ▴ 520
1
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0
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1.4k
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Answer: A: Extracting specific regions(ex, chr1:100-200 of hg38) from whole genome .vg and
updated 4.9 years ago by 35k • written 4.9 years ago by ▴ 520
0
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1
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1.3k
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Answer: A: More haplotype threads than expected
4.9 years ago by glenn.hickey ▴ 520
2
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1
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1.1k
views
Answer: A: How to determine haplotypes from variation graphs
4.9 years ago by glenn.hickey ▴ 520
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