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665
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Comment: Comment: How to download NCBI's Identical Protein Group (IPG) database
5 months ago by Irsan ★ 7.8k
90
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48
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38k
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29 follow
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm rna-seq bioconductor
updated 17 months ago by 45k • written 11.5 years ago by ★ 7.8k
0
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0
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490
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Show mismatches for specific positions in AlignmentsTrack of Gviz package
R bioconductor
19 months ago by Irsan ★ 7.8k
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0
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1.4k
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Comment: Comment: How to write gffutils.feature.Feature object to file
3.6 years ago by Irsan ★ 7.8k
4
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2
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1.4k
views
How to write gffutils.feature.Feature object to file
gffutils python gff
3.6 years ago by Irsan ★ 7.8k
1
vote
1
reply
975
views
How to get uniform data yields per barcode in nanopore sequencing
ONT nanopore
updated 3.7 years ago by ▴ 590 • written 3.7 years ago by ★ 7.8k
1
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0
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5.0k
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Answer: A: Xenome Star Aligner
updated 4.4 years ago by 45k • written 11.0 years ago by ★ 7.8k
1
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1
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5.1k
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Comment: C: How to get transcripts lengths from RNAseq data to calculate TPM
4.5 years ago by Irsan ★ 7.8k
2
votes
1
reply
1.6k
views
Canu diploid assembly with nanopore reads
assembly canu diploid
updated 4.5 years ago by 20 • written 4.5 years ago by ★ 7.8k
1
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1
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4.9k
views
Answer: A: How To Remove The Identifier And Quality From A Fastq File
updated 4.7 years ago by 45k • written 12.3 years ago by ★ 7.8k
0
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0
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2.1k
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Comment: C: How do you get input files to a cromwell server
4.9 years ago by Irsan ★ 7.8k
0
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2
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2.1k
views
How do you get input files to a cromwell server
cromwell wdl widdle workflow
updated 4.9 years ago by ★ 1.2k • written 4.9 years ago by ★ 7.8k
3
votes
1
reply
8.9k
views
Answer: A: Get Genotypes From Affymetrix Snp 6.0 Array
updated 5.1 years ago by 89k • written 12.1 years ago by ★ 7.8k
12
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2
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27k
views
Answer: Answer: Calculate Per Exon/Per Gene Coverage
updated 3.2 years ago by 105k • written 12.2 years ago by ★ 7.8k
7
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1
reply
21k
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Answer: A: Scatter Plot For Correlations With Heatdensity
updated 5.3 years ago by 45k • written 11.9 years ago by ★ 7.8k
0
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1
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2.9k
views
Answer: A: how to normalise/Scale the FPKM and Ka/Ks value in a matrix?
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 7.8k
0
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1
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5.1k
views
Comment: C: CBS segmentation with DNAcopy taking ages/hanging
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 7.8k
0
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0
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5.1k
views
Comment: C: CBS segmentation with DNAcopy taking ages/hanging
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 7.8k
2
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1
reply
5.6k
views
Answer: A: calculating the exome size from latest GTF file
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 7.8k
1
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2
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6.3k
views
Comment: C: plotting interactions in R with two data sets
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 7.8k
4
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1
reply
6.3k
views
Answer: A: plotting interactions in R with two data sets
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 7.8k
8
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2
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15k
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Answer: A: CNV analysis tool on exome data for NGS
updated 5.3 years ago by 45k • written 11.0 years ago by ★ 7.8k
0
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1
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6.2k
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Comment: C: Percentage Of Exons Covered
updated 5.3 years ago by 45k • written 11.8 years ago by ★ 7.8k
1
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1
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3.7k
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Answer: A: Possible methodology implemented in R/Bioconductor packages to integrate and ana
updated 5.4 years ago by 45k • written 9.6 years ago by ★ 7.8k
24
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4
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141k
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Answer: A: Fastq Convert To Fasta
updated 5.4 years ago by 45k • written 11.4 years ago by ★ 7.8k
1
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0
replies
2.0k
views
Answer: A: Method to detect gene co-expression of genomic feature in cell lineage
updated 5.5 years ago by 45k • written 9.8 years ago by ★ 7.8k
1
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1
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15k
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Comment: C: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 5.5 years ago by 45k • written 11.5 years ago by ★ 7.8k
3
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0
replies
3.4k
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Answer: A: How To Determine Structural Variant Type Or Reformat Breakpoint Data To Bam
updated 5.5 years ago by 45k • written 12.0 years ago by ★ 7.8k
0
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6
replies
3.7k
views
Cnv Analysis After Segmentations
cnv
updated 2.5 years ago by 45k • written 12.5 years ago by ★ 7.8k
24
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3
replies
3.4k
views
Blog: General recommendations for cancer genomics studies
cancer genomics recommendations
updated 2.2 years ago by 45k • written 8.9 years ago by ★ 7.8k
1
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0
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2.3k
views
Comment: C: Workshop: Data manipulation and visualization with Python (3 places left)
8.2 years ago by Irsan ★ 7.8k
6
votes
4
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6.8k
views
Download Geo Samples Table
geo
updated 8.3 years ago by 20 • written 12.0 years ago by ★ 7.8k
1
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0
replies
141k
views
Comment: C: Fastq Convert To Fasta
8.4 years ago by Irsan ★ 7.8k
0
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0
replies
2.3k
views
Answer: A: Heatmap trouble in R
8.5 years ago by Irsan ★ 7.8k
0
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0
replies
5.3k
views
Comment: C: Is microarray gene expression analysis is dead ?
8.5 years ago by Irsan ★ 7.8k
1
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0
replies
3.2k
views
Comment: C: How to draw lego plot Using Mutation Data (MAF format input)?
8.5 years ago by Irsan ★ 7.8k
0
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1
reply
5.3k
views
Answer: A: Is microarray gene expression analysis is dead ?
8.5 years ago by Irsan ★ 7.8k
2
votes
4
replies
5.1k
views
Why does GISTIC require a markers file?
GISTIC Copy number
updated 8.7 years ago by ▴ 10 • written 8.8 years ago by ★ 7.8k
2
votes
0
replies
9.8k
views
Comment: C: Calculate LogR ratio and BAF from X and Y intensities
8.8 years ago by Irsan ★ 7.8k
1
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1
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9.8k
views
Answer: A: Calculate LogR ratio and BAF from X and Y intensities
8.8 years ago by Irsan ★ 7.8k
0
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0
replies
15k
views
Comment: C: How to get counts of STAR output (sam/bam).
8.8 years ago by Irsan ★ 7.8k
1
vote
1
reply
15k
views
Answer: A: How to get counts of STAR output (sam/bam).
8.8 years ago by Irsan ★ 7.8k
11
votes
3
replies
14k
views
Answer: A: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
8.8 years ago by Irsan ★ 7.8k
0
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1
reply
5.1k
views
Comment: C: csv into genome browser
8.9 years ago by Irsan ★ 7.8k
1
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1
reply
5.1k
views
Comment: C: csv into genome browser
8.9 years ago by Irsan ★ 7.8k
0
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1
reply
2.3k
views
Answer: A: CNV detection analysis using R or Matlab
8.9 years ago by Irsan ★ 7.8k
0
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0
replies
2.2k
views
Comment: C: Co-variants in differential expression analysis
8.9 years ago by Irsan ★ 7.8k
1
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0
replies
4.5k
views
Comment: C: mutation signature in cancer
9.0 years ago by Irsan ★ 7.8k
0
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0
replies
1.8k
views
Comment: C: Can I identify differential expressing genes of 2 samples using only 4 chips?
9.0 years ago by Irsan ★ 7.8k
0
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1
reply
4.8k
views
Comment: C: Downregulated Genes with GFOLD
9.0 years ago by Irsan ★ 7.8k
495 results • Page 1 of 10
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