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386
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Comment: Comment: How to download NCBI's Identical Protein Group (IPG) database
4 weeks ago by Irsan ★ 7.8k
90
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48
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36k
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29 follow
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm rna-seq bioconductor
updated 12 months ago by 44k • written 11.1 years ago by ★ 7.8k
0
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0
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425
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Show mismatches for specific positions in AlignmentsTrack of Gviz package
R bioconductor
15 months ago by Irsan ★ 7.8k
0
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0
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1.3k
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Comment: Comment: How to write gffutils.feature.Feature object to file
3.2 years ago by Irsan ★ 7.8k
4
votes
2
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1.3k
views
How to write gffutils.feature.Feature object to file
gffutils python gff
3.2 years ago by Irsan ★ 7.8k
1
vote
1
reply
886
views
How to get uniform data yields per barcode in nanopore sequencing
ONT nanopore
updated 3.3 years ago by ▴ 580 • written 3.3 years ago by ★ 7.8k
1
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0
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4.8k
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Answer: A: Xenome Star Aligner
updated 4.1 years ago by 44k • written 10.6 years ago by ★ 7.8k
1
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1
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4.6k
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Comment: C: How to get transcripts lengths from RNAseq data to calculate TPM
4.1 years ago by Irsan ★ 7.8k
2
votes
1
reply
1.5k
views
Canu diploid assembly with nanopore reads
assembly canu diploid
updated 4.1 years ago by 20 • written 4.2 years ago by ★ 7.8k
1
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1
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4.6k
views
Answer: A: How To Remove The Identifier And Quality From A Fastq File
updated 4.4 years ago by 44k • written 12.0 years ago by ★ 7.8k
0
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0
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1.9k
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Comment: C: How do you get input files to a cromwell server
4.6 years ago by Irsan ★ 7.8k
0
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2
replies
1.9k
views
How do you get input files to a cromwell server
cromwell wdl widdle workflow
updated 4.6 years ago by ★ 1.2k • written 4.6 years ago by ★ 7.8k
3
votes
1
reply
8.6k
views
Answer: A: Get Genotypes From Affymetrix Snp 6.0 Array
updated 4.7 years ago by 88k • written 11.8 years ago by ★ 7.8k
12
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2
replies
27k
views
Answer: Answer: Calculate Per Exon/Per Gene Coverage
updated 2.9 years ago by 104k • written 11.8 years ago by ★ 7.8k
7
votes
1
reply
21k
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Answer: A: Scatter Plot For Correlations With Heatdensity
updated 4.9 years ago by 44k • written 11.5 years ago by ★ 7.8k
0
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1
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2.8k
views
Answer: A: how to normalise/Scale the FPKM and Ka/Ks value in a matrix?
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 7.8k
0
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1
reply
4.9k
views
Comment: C: CBS segmentation with DNAcopy taking ages/hanging
updated 4.9 years ago by 44k • written 10.6 years ago by ★ 7.8k
0
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0
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4.9k
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Comment: C: CBS segmentation with DNAcopy taking ages/hanging
updated 4.9 years ago by 44k • written 10.6 years ago by ★ 7.8k
2
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1
reply
5.4k
views
Answer: A: calculating the exome size from latest GTF file
updated 4.9 years ago by 44k • written 10.6 years ago by ★ 7.8k
1
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2
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6.0k
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Comment: C: plotting interactions in R with two data sets
updated 4.9 years ago by 44k • written 10.6 years ago by ★ 7.8k
4
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1
reply
6.0k
views
Answer: A: plotting interactions in R with two data sets
updated 4.9 years ago by 44k • written 10.6 years ago by ★ 7.8k
8
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2
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14k
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Answer: A: CNV analysis tool on exome data for NGS
updated 4.9 years ago by 44k • written 10.6 years ago by ★ 7.8k
0
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1
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5.7k
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Comment: C: Percentage Of Exons Covered
updated 4.9 years ago by 44k • written 11.4 years ago by ★ 7.8k
1
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1
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3.5k
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Answer: A: Possible methodology implemented in R/Bioconductor packages to integrate and ana
updated 5.0 years ago by 44k • written 9.2 years ago by ★ 7.8k
24
votes
4
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136k
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Answer: A: Fastq Convert To Fasta
updated 5.1 years ago by 44k • written 11.1 years ago by ★ 7.8k
1
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0
replies
1.9k
views
Answer: A: Method to detect gene co-expression of genomic feature in cell lineage
updated 5.1 years ago by 44k • written 9.5 years ago by ★ 7.8k
1
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1
reply
15k
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Comment: C: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 5.1 years ago by 44k • written 11.1 years ago by ★ 7.8k
3
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0
replies
3.2k
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Answer: A: How To Determine Structural Variant Type Or Reformat Breakpoint Data To Bam
updated 5.1 years ago by 44k • written 11.6 years ago by ★ 7.8k
0
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6
replies
3.6k
views
Cnv Analysis After Segmentations
cnv
updated 2.1 years ago by 44k • written 12.2 years ago by ★ 7.8k
24
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3
replies
3.3k
views
Blog: General recommendations for cancer genomics studies
cancer genomics recommendations
updated 21 months ago by 44k • written 8.5 years ago by ★ 7.8k
1
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0
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2.2k
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Comment: C: Workshop: Data manipulation and visualization with Python (3 places left)
7.8 years ago by Irsan ★ 7.8k
6
votes
4
replies
6.6k
views
Download Geo Samples Table
geo
updated 7.9 years ago by 20 • written 11.6 years ago by ★ 7.8k
1
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0
replies
136k
views
Comment: C: Fastq Convert To Fasta
8.1 years ago by Irsan ★ 7.8k
0
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0
replies
2.2k
views
Answer: A: Heatmap trouble in R
8.1 years ago by Irsan ★ 7.8k
0
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0
replies
5.1k
views
Comment: C: Is microarray gene expression analysis is dead ?
8.1 years ago by Irsan ★ 7.8k
1
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0
replies
3.1k
views
Comment: C: How to draw lego plot Using Mutation Data (MAF format input)?
8.1 years ago by Irsan ★ 7.8k
0
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1
reply
5.1k
views
Answer: A: Is microarray gene expression analysis is dead ?
8.1 years ago by Irsan ★ 7.8k
2
votes
4
replies
5.0k
views
Why does GISTIC require a markers file?
GISTIC Copy number
updated 8.4 years ago by ▴ 10 • written 8.5 years ago by ★ 7.8k
2
votes
0
replies
9.3k
views
Comment: C: Calculate LogR ratio and BAF from X and Y intensities
8.4 years ago by Irsan ★ 7.8k
1
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1
reply
9.3k
views
Answer: A: Calculate LogR ratio and BAF from X and Y intensities
8.4 years ago by Irsan ★ 7.8k
0
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0
replies
15k
views
Comment: C: How to get counts of STAR output (sam/bam).
8.5 years ago by Irsan ★ 7.8k
1
vote
1
reply
15k
views
Answer: A: How to get counts of STAR output (sam/bam).
8.5 years ago by Irsan ★ 7.8k
11
votes
3
replies
13k
views
Answer: A: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
8.5 years ago by Irsan ★ 7.8k
0
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1
reply
4.8k
views
Comment: C: csv into genome browser
8.5 years ago by Irsan ★ 7.8k
1
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1
reply
4.8k
views
Comment: C: csv into genome browser
8.5 years ago by Irsan ★ 7.8k
0
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1
reply
2.2k
views
Answer: A: CNV detection analysis using R or Matlab
8.5 years ago by Irsan ★ 7.8k
0
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0
replies
2.0k
views
Comment: C: Co-variants in differential expression analysis
8.5 years ago by Irsan ★ 7.8k
1
vote
0
replies
4.4k
views
Comment: C: mutation signature in cancer
8.6 years ago by Irsan ★ 7.8k
0
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0
replies
1.7k
views
Comment: C: Can I identify differential expressing genes of 2 samples using only 4 chips?
8.6 years ago by Irsan ★ 7.8k
0
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1
reply
4.7k
views
Comment: C: Downregulated Genes with GFOLD
8.6 years ago by Irsan ★ 7.8k
495 results • Page 1 of 10
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