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Answer: Answer: query PL field with bcftools
3.1 years ago by Stephane Plaisance ▴ 460
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3.8k
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Comment: C: Advice on assembling very large metagenomic dataset?
4.4 years ago by Stephane Plaisance ▴ 460
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4
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3.4k
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bcftools filtering on INFO fields
variants vcf bcftools variant
4.8 years ago by Stephane Plaisance ▴ 460
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1
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3.4k
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Comment: A: bcftools filtering on INFO fields
4.8 years ago by Stephane Plaisance ▴ 460
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Comment: A: bcftools filtering on INFO fields
4.8 years ago by Stephane Plaisance ▴ 460
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35k
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Answer: A: Count Of Variants
4.8 years ago by Stephane Plaisance ▴ 460
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6.0k
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Comment: C: adding suffix /1 & /2 to PE data - abyss input data
4.9 years ago by Stephane Plaisance ▴ 460
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723
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how to best rotate a chloroplast plastid map
assembly plastid
4.9 years ago by Stephane Plaisance ▴ 460
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1.3k
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SNPEFF genome build with specific codon usage
SnpEff variants annotation
updated 5.0 years ago by 20 • written 5.0 years ago by ▴ 460
3
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1
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33k
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Comment: A: Biomart Bioconductor - Retrieving All Entrezgenes Of Hsapiens_Gene_Ensembl
updated 5.3 years ago by 45k • written 10.9 years ago by ▴ 460
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5
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Answer: A: Harvesting Known Disease Mutations
updated 5.6 years ago by 45k • written 13.6 years ago by ▴ 460
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1.5k
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Comment: C: sequencing to identify novel restriction sites
6.3 years ago by Stephane Plaisance ▴ 460
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2
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1.5k
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Comment: C: sequencing to identify novel restriction sites
6.3 years ago by Stephane Plaisance ▴ 460
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1
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1.5k
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Comment: A: sequencing to identify novel restriction sites
6.3 years ago by Stephane Plaisance ▴ 460
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9
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1.5k
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sequencing to identify novel restriction sites
sequencing
6.3 years ago by Stephane Plaisance ▴ 460
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1
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55k
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Comment: C: How To Split A Multiple Fasta
updated 6.5 years ago by 45k • written 7.9 years ago by ▴ 460
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61k
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Comment: C: Download All The Bacterial Genomes From Ncbi
6.5 years ago by Stephane Plaisance ▴ 460
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1
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3.0k
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Answer: A: bioawk output in original fastq format
updated 6.5 years ago by 87k • written 6.5 years ago by ▴ 460
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2
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4.8k
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Merging And De-Duplicating Structural Variant Calls (Bedpe)
intersect structural
updated 6.7 years ago by 20 • written 13.8 years ago by ▴ 460
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4.2k
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Answer: A: look for the old version blast (not blast+)
6.7 years ago by Stephane Plaisance ▴ 460
3
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18k
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Answer: A: Extracting Paired-End Reads Sitting In Different Chromosomes
6.8 years ago by Stephane Plaisance ▴ 460
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Comment: C: create a track with mismatch density from a SAM/bam file
7.2 years ago by Stephane Plaisance ▴ 460
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2.4k
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Answer: A: create a track with mismatch density from a SAM/bam file
7.2 years ago by Stephane Plaisance ▴ 460
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5
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2.4k
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create a track with mismatch density from a SAM/bam file
sam bam mismatch
7.2 years ago by Stephane Plaisance ▴ 460
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0
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2.4k
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Answer: A: create a track with mismatch density from a SAM/bam file
7.2 years ago by Stephane Plaisance ▴ 460
2
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0
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35k
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Answer: A: Is Paired End analysis possible with FASTQC?
7.2 years ago by Stephane Plaisance ▴ 460
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0
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17k
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Answer: A: Using the row order of one pheatmap to set the order of another. How to do it?
7.4 years ago by Stephane Plaisance ▴ 460
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1.6k
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Comment: C: bam-readcount does not accept Varscan native format for -l (feature request)
7.5 years ago by Stephane Plaisance ▴ 460
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1
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1.6k
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bam-readcount does not accept Varscan native format for -l (feature request)
varscan2
7.5 years ago by Stephane Plaisance ▴ 460
3
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1
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25k
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Comment: C: Building Snpeff Database
7.6 years ago by Stephane Plaisance ▴ 460
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12k
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Comment: C: Note: Neither --ploidy nor --ploidy-file given, assuming all sites are diploid [
7.7 years ago by Stephane Plaisance ▴ 460
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4.8k
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Comment: C: Tool to generate a chain file from an agp file
7.9 years ago by Stephane Plaisance ▴ 460
2
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0
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5.2k
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Comment: C: Best tools for lifting over genome coordinates for non model organism (custom) r
7.9 years ago by Stephane Plaisance ▴ 460
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Comment: C: How to Filter ENSembl to fetch more confident transcripts
8.1 years ago by Stephane Plaisance ▴ 460
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2
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2.8k
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Comment: C: How to Filter ENSembl to fetch more confident transcripts
8.1 years ago by Stephane Plaisance ▴ 460
2
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5
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2.8k
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How to Filter ENSembl to fetch more confident transcripts
ensembl biomart transcripts
updated 8.1 years ago by 24k • written 8.1 years ago by ▴ 460
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1
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1.9k
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Comment: A: bioperl Bio::SeqIO join + complement weirdness
8.1 years ago by Stephane Plaisance ▴ 460
2
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3
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1.9k
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bioperl Bio::SeqIO join + complement weirdness
bioperl
8.1 years ago by Stephane Plaisance ▴ 460
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0
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25k
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Comment: C: Converting Gff/Gtf + Reference To Embl Or Genbank ...Any Tools Available?
8.1 years ago by Stephane Plaisance ▴ 460
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7.5k
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Answer: A: Problems With Bioconductor'S Genomicfeatures Package
8.6 years ago by Stephane Plaisance ▴ 460
0
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1
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16k
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Answer: A: Extract Fasta Sequences Sub Sets
9.1 years ago by Stephane Plaisance ▴ 460
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1
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4.3k
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Bedtools map end with warning about a 'leading zero' error
bedtools
updated 2.7 years ago by 45k • written 9.5 years ago by ▴ 460
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18
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11k
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9 follow
Harvesting Known Disease Mutations
disease mutation variant human
updated 10.3 years ago by 20 • written 13.6 years ago by ▴ 460
2
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0
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6.3k
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Answer: A: Tf-Target Enrichment Analysis
11.0 years ago by Stephane Plaisance ▴ 460
4
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5
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3.4k
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Mitochondrial Haplogroup Determination
updated 11.5 years ago by 20 • written 13.2 years ago by ▴ 460
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1
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3.4k
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Comment: C: Mitochondrial Haplogroup Determination
13.2 years ago by Stephane Plaisance ▴ 460
1
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0
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9.8k
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Answer: A: How To Remove Overlapping And Common Exons From Multiple Transcripts Of A Gene
13.4 years ago by Stephane Plaisance ▴ 460
1
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1
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7.6k
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Answer: A: Finding Reference Sequences And Interpretation Of Data From Repeatmasker Ucsc Ta
13.4 years ago by Stephane Plaisance ▴ 460
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0
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11k
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Comment: C: Harvesting Known Disease Mutations
13.6 years ago by Stephane Plaisance ▴ 460
0
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0
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11k
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Comment: C: Harvesting Known Disease Mutations
13.6 years ago by Stephane Plaisance ▴ 460
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