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Comment: Comment: HTSlib threads when ingesting large bgzipped FASTA
6 weeks ago by aw7 ▴ 370
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486
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Answer: Answer: Does sam 2048 flag discriminate secondary from supplementary alignments?
7 weeks ago by aw7 ▴ 370
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539
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Answer: Answer: samtools reheader error
4 months ago by aw7 ▴ 370
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692
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Answer: Answer: samtools version 1.17 having difficulty parsing a filtering command. advice?
5 months ago by aw7 ▴ 370
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539
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Comment: Comment: Guidance on Reference-Based Assembly and Variant Analysis of Exome Sequencing Da
9 months ago by aw7 ▴ 370
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1
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1.6k
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Answer: Answer: samtools write-index
11 months ago by aw7 ▴ 370
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1.4k
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Comment: Comment: Using samtools with GCS (google cloud storage) on a docker container seems to gi
11 months ago by aw7 ▴ 370
3
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589
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Answer: Answer: Long reads and fixing of mate-pair issues/marking duplicates with samtools
11 months ago by aw7 ▴ 370
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1.1k
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Answer: Answer: Help interpreting Samtools Flagstat results
15 months ago by aw7 ▴ 370
3
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1.3k
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Answer: Answer: samtools index: failed to create index. ([E::hts_idx_push] NO_COOR reads not in
15 months ago by aw7 ▴ 370
2
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681
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Answer: Answer: Issue softclipping reads when they belong and don't belong to a common amplicon
17 months ago by aw7 ▴ 370
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1.0k
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Comment: Comment: Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coor
17 months ago by aw7 ▴ 370
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1.0k
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Answer: Answer: Filtering for primary and secondary reads using sam flags (0 properly paired rea
18 months ago by aw7 ▴ 370
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0
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1.5k
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Comment: Comment: How is the format of the bed file for samtools ampliconclip
20 months ago by aw7 ▴ 370
4
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1.1k
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Answer: Answer: samtools ampliconclip option --strand is not working?
20 months ago by aw7 ▴ 370
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603
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Comment: Comment: How to get MD tag sequence of a read from a sam file given a bed file?
20 months ago by aw7 ▴ 370
3
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1
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2.6k
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Answer: Answer: What are bitsets in Samtools flagstat output?
20 months ago by aw7 ▴ 370
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1.8k
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Comment: Comment: Edit and re-head BAM file
23 months ago by aw7 ▴ 370
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1.6k
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Comment: Comment: Sort BAM file by read mates
2.5 years ago by aw7 ▴ 370
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1
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1.6k
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Comment: Comment: Samtools flagstat
2.6 years ago by aw7 ▴ 370
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1.5k
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Comment: Comment: Samtools ampliconclip hard clip not giving same results as soft clip
2.6 years ago by aw7 ▴ 370
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2.8k
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Comment: Comment: How to properly pass from samtools rmdup to samtools markdup
2.7 years ago by aw7 ▴ 370
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1.3k
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Comment: Comment: BAM reheader
3.0 years ago by aw7 ▴ 370
2
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1.9k
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Answer: Answer: What is the MAPQ value of flag 512 for bam file?
3.1 years ago by aw7 ▴ 370
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1.6k
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Comment: Comment: samtools markdup
3.2 years ago by aw7 ▴ 370
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1
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1.6k
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Comment: Comment: samtools markdup
3.2 years ago by aw7 ▴ 370
2
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5.1k
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Comment: Comment: samtools sort not working when using multiple threads
3.2 years ago by aw7 ▴ 370
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2.2k
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Comment: Comment: Samtools on arm / aws
3.2 years ago by aw7 ▴ 370
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1
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2.2k
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Answer: Answer: Samtools on arm / aws
3.2 years ago by aw7 ▴ 370
1
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1
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5.1k
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Comment: Comment: samtools sort not working when using multiple threads
3.2 years ago by aw7 ▴ 370
1
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0
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2.1k
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Answer: Answer: Header error while converting sam file to bam
3.4 years ago by aw7 ▴ 370
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1.8k
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Answer: Answer: Picard vs Samtools converting CRAM to FASTQ
3.5 years ago by aw7 ▴ 370
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1.8k
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Comment: Comment: bamdst gives error "EOF marker is absent. The input is probably truncated."
3.6 years ago by aw7 ▴ 370
3
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0
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1.4k
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Answer: Answer: What does samtools mean by 'orientation' when marking duplicates?
3.6 years ago by aw7 ▴ 370
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1.3k
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Answer: Answer: What does the -0 flag of samtools fastq mean?
4.1 years ago by aw7 ▴ 370
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0
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1.6k
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Answer: A: Doing nohup samtools sort and [ 1]+ Exit 1 is showing up
4.4 years ago by aw7 ▴ 370
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