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2
votes
1
reply
352
views
extracting cell specific reads from cellranger BAM output file
bam
cellranger
seurat
updated 4 months ago by
Ram
44k • written 4 months ago by
singcell
• 0
0
votes
0
replies
280
views
Allele specific expression of imprinted gens from 10x scRNA-seq data
scrna-seq
imprinted
10x
genes
7 months ago by
singcell
• 0
12
votes
13
replies
18k
views
6 follow
Cluster sub-set analysis using Seurat
seurat
single-cell
updated 12 months ago by
j.gleixner
▴ 30 • written 4.5 years ago by
singcell
• 0
0
votes
2
replies
972
views
Normalizing Salmon output count data matrix using DESeq2
tximport
counts
Salmon
DESeq2
updated 24 months ago by
ATpoint
86k • written 24 months ago by
singcell
• 0
0
votes
1
reply
1.4k
views
Comment:
Comment: Number of cells in each clusters
2.3 years ago by
singcell
• 0
2
votes
3
replies
1.4k
views
Number of cells in each clusters
numbers
Seurat
cell
updated 2.3 years ago by
jared.andrews07
★ 18k • written 2.3 years ago by
singcell
• 0
1
vote
1
reply
675
views
Removing contamination of set of genes from selected cell clusters
contamination
scrna-seq
seurat
cell
updated 2.4 years ago by
ATpoint
86k • written 2.4 years ago by
singcell
• 0
1
vote
1
reply
856
views
which version "EnsDb.Rnorvegicus.v79" assembly correspond to rn5 or rn6?
reference
single-cell
signac
genome
updated 2.8 years ago by
ATpoint
86k • written 2.8 years ago by
singcell
• 0
0
votes
0
replies
725
views
Gene expression values each samples (replicates) using `AverageExpression` function
SEURAT
SINGLE-CELL
averageexpression
3.8 years ago by
singcell
• 0
0
votes
1
reply
4.4k
views
Comment:
C: How do I change size of gene names displayed on plotHeatmap from scater R Packag
4.4 years ago by
singcell
• 0
0
votes
1
reply
748
views
Is it possible to determine if cells are clustered by samples and not by cell types?
single-cell
RNA-Seq
Seurat
Sample variation
updated 4.4 years ago by
Biostar
20 • written 4.5 years ago by
singcell
• 0
0
votes
1
reply
18k
views
Comment:
C: Cluster sub-set analysis using Seurat
4.4 years ago by
singcell
• 0
0
votes
0
replies
3.7k
views
Comment:
C: Deterimining overall number of differentially expressed genes between WT and KO
4.5 years ago by
singcell
• 0
4
votes
9
replies
3.7k
views
Deterimining overall number of differentially expressed genes between WT and KO samples
Seurat
scRNA-Seq
DEG
Findmarkers
4.5 years ago by
singcell
• 0
0
votes
0
replies
3.7k
views
Answer:
A: Deterimining overall number of differentially expressed genes between WT and KO
4.5 years ago by
singcell
• 0
0
votes
0
replies
3.7k
views
Comment:
C: Deterimining overall number of differentially expressed genes between WT and KO
4.5 years ago by
singcell
• 0
0
votes
0
replies
3.7k
views
Comment:
C: Deterimining overall number of differentially expressed genes between WT and KO
4.5 years ago by
singcell
• 0
0
votes
0
replies
10.0k
views
Comment:
C: EdgeR for single cell differential expression analysis
4.5 years ago by
singcell
• 0
1
vote
0
replies
762
views
Calculating in SEURAT, list of highly dysregulated genes across conditions in a particular cluster.
rna-seq
seurat
Stimulated vs Control PBMCs
4.7 years ago by
singcell
• 0
0
votes
1
reply
3.2k
views
Comment:
C: Calculating differential expression genes between two sample sequenced using 10x
5.0 years ago by
singcell
• 0
3
votes
3
replies
3.2k
views
Calculating differential expression genes between two sample sequenced using 10x
RNA-Seq
sequencing
updated 5.0 years ago by
Kristoffer Vitting-Seerup
★ 4.1k • written 5.0 years ago by
singcell
• 0
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