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Comment: C: Found a raw data file; which -omics technology is this output from?
8.3 years ago by biohack92 ▴ 170
3
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5
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1.8k
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Found a raw data file; which -omics technology is this output from?
RNA-Seq rna-seq sequencing next-gen
8.3 years ago by biohack92 ▴ 170
2
votes
1
reply
1.6k
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How to calculate correlations across two matrices across samples?
statistics R sequencing methylation
updated 8.4 years ago by 20 • written 8.9 years ago by ▴ 170
6
votes
1
reply
3.7k
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What's the difference between Bioconductor's knownGene and ensGene annotation packages?
R Bioconductor annotation Ensembl
updated 8.7 years ago by 24k • written 8.9 years ago by ▴ 170
4
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2
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2.2k
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Is there any reason to analyze plus/minus strands separately in bisulfite seq/methylation data?
bisulfite sequencing methylation
updated 8.8 years ago by ★ 5.2k • written 8.8 years ago by ▴ 170
0
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0
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2.6k
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Comment: C: ggbio package only works with h19 genome
8.8 years ago by biohack92 ▴ 170
0
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1
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2.3k
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List of exon coordinates from a single Entrez gene ID. Are these exons for alternative splicings of the gene?
genomicranges R Bioconductor
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by ▴ 170
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0
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1.9k
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Comment: C: Is there any way to determine whether my sequenced data uses 0- or 1-based coord
8.8 years ago by biohack92 ▴ 170
1
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2
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1.9k
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Is there any way to determine whether my sequenced data uses 0- or 1-based coordinates?
sequencing coordinates genome bed bedgraph
updated 8.8 years ago by 36k • written 8.8 years ago by ▴ 170
7
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4
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3.1k
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How do you remove coverage outliers in sequencing count data?
bisulfite sequencing qc R quality control
updated 8.8 years ago by 15k • written 8.8 years ago by ▴ 170
0
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1
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3.1k
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Comment: C: How do you remove coverage outliers in sequencing count data?
8.8 years ago by biohack92 ▴ 170
0
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0
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9.4k
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Comment: C: Running Eigenstrat?
9.3 years ago by biohack92 ▴ 170
0
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0
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9.4k
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Comment: C: Running Eigenstrat?
9.3 years ago by biohack92 ▴ 170
20
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12
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12k
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8 follow
What is a typical workflow to correlate methylation and expression data?
methylation expression bioconductor R epigenetics
updated 2.4 years ago by 44k • written 10.6 years ago by ▴ 170
4
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8
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8.3k
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How Can I Get Download Genbank Files With Just The Accession Number?
genbank bioperl
updated 9.5 years ago by 20 • written 11.8 years ago by ▴ 170
0
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0
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4.3k
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Comment: Comment: How to maintain same color key across multiple heatmaps despite different datase
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 170
0
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2
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4.3k
views
How to maintain same color key across multiple heatmaps despite different datasets using heatmap.3
r heatmap
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 170
3
votes
6
replies
4.2k
views
Is this a .bed file? If so, why is it not importing into IGV properly?
bed genomics bam igv
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 170
0
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1
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4.2k
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Comment: C: Is this a .bed file? If so, why is it not importing into IGV properly?
10.0 years ago by biohack92 ▴ 170
5
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4
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3.4k
views
How can I look at nonsense mutations in a particular gene in TCGA data?
sequence mutations tcga
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 170
0
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0
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3.4k
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Comment: Comment: How can I look at nonsense mutations in a particular gene in TCGA data?
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 170
0
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0
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4.8k
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Comment: C: Minfi Package - Illumina 450K Methylation Array - Editing Idat Files
10.3 years ago by biohack92 ▴ 170
0
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0
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2.1k
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Comment: C: What is RGsetex and Msetex in the minfi package?
10.5 years ago by biohack92 ▴ 170
1
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2
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2.1k
views
What is RGsetex and Msetex in the minfi package?
R bioconductor methylation
updated 3.2 years ago by 44k • written 10.5 years ago by ▴ 170
3
votes
1
reply
13k
views
How do I get gene annotation for probes on Illumina's HM450k arrays in FDb.InfiniumMethylation.hg19?
methylation microarray r bioconductor R
updated 10.8 years ago by 49k • written 10.8 years ago by ▴ 170
1
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1
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3.6k
views
Is there a standard to the range/breaks in z-score coloring for microarray expression data?
R
updated 3.4 years ago by 44k • written 10.8 years ago by ▴ 170
0
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1
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8.3k
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Comment: C: How Can I Get Download Genbank Files With Just The Accession Number?
11.8 years ago by biohack92 ▴ 170
3
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2
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2.1k
views
Help! I Can Successfully Run A Blastp Search In Bioperl But I Want To Also Perform Blastn.
blast perl
11.9 years ago by biohack92 ▴ 170
0
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0
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5.5k
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Comment: C: Need Help Interpreting The Percent Identity From Blat M8/9 Output
12.3 years ago by biohack92 ▴ 170
0
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0
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5.5k
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Comment: C: Need Help Interpreting The Percent Identity From Blat M8/9 Output
12.3 years ago by biohack92 ▴ 170
7
votes
6
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5.5k
views
Need Help Interpreting The Percent Identity From Blat M8/9 Output
blat alignment
updated 12.3 years ago by 11k • written 12.3 years ago by ▴ 170
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