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93
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19
replies
62k
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18 follow
What Is A Good Phylogenetic Tree Display Program For Large Data Sets?
phylogenetics-tree
updated 17 months ago by 44k • written 14.2 years ago by ★ 2.6k
2
votes
0
replies
66k
views
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.5 years ago by 44k • written 12.5 years ago by ★ 2.6k
4
votes
2
replies
66k
views
Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.5 years ago by 44k • written 12.6 years ago by ★ 2.6k
1
vote
0
replies
2.2k
views
Answer: A: Equivalent To Price Per Base In Massspec Peptide Fragment Sequencing?
updated 5.0 years ago by 44k • written 12.6 years ago by ★ 2.6k
3
votes
2
replies
32k
views
Answer: A: Running Pymol From Python Script
updated 5.1 years ago by 44k • written 12.6 years ago by ★ 2.6k
4
votes
1
reply
2.9k
views
Answer: A: Optimal Scripting Language Config For Bioinfomatics In Windows 7
updated 5.2 years ago by 44k • written 12.7 years ago by ★ 2.6k
1
vote
0
replies
4.0k
views
Answer: A: Which Version Control System Is Most Common For Bioinformatics?
updated 5.2 years ago by 44k • written 13.0 years ago by ★ 2.6k
2
votes
0
replies
5.9k
views
Answer: A: Install Bioperl On Windows With Active Perl 5.14
updated 5.2 years ago by 44k • written 13.0 years ago by ★ 2.6k
2
votes
1
reply
16k
views
Answer: A: Ncbi Blast Failing For Unknown Reasons
updated 5.2 years ago by 44k • written 13.1 years ago by ★ 2.6k
2
votes
0
replies
9.0k
views
Answer: A: When Is Dna Better Choice Than Aminoacids For Multiple Sequence Alignments And P
updated 5.2 years ago by 44k • written 13.1 years ago by ★ 2.6k
3
votes
0
replies
6.5k
views
Answer: A: What Bioinformatics 101 Courses Are Recommended?
updated 5.2 years ago by 44k • written 14.2 years ago by ★ 2.6k
0
votes
0
replies
23k
views
Comment: C: How Can I Automate Blast Of >1 Sequence And Output The Top Hits For Each Input?
updated 5.2 years ago by 44k • written 14.2 years ago by ★ 2.6k
6
votes
4
replies
23k
views
Answer: A: How Can I Automate Blast Of >1 Sequence And Output The Top Hits For Each Input?
updated 5.2 years ago by 44k • written 14.2 years ago by ★ 2.6k
0
votes
0
replies
6.1k
views
Comment: C: How To Show More Blast Results Using Biopython?
updated 5.2 years ago by 44k • written 14.2 years ago by ★ 2.6k
0
votes
0
replies
5.2k
views
Comment: A: How Can I Convert Hmmer Hmm Descriptions To Psi-Blast Pssms?
updated 5.2 years ago by 44k • written 14.1 years ago by ★ 2.6k
0
votes
1
reply
8.1k
views
Comment: C: Code For Generating 'Consensus' Sequence From Pairwise Alignment
6.0 years ago by Niek De Klein ★ 2.6k
1
vote
0
replies
4.4k
views
Comment: C: How can I fix picard error: Sequences at index 0 don't match
6.1 years ago by Niek De Klein ★ 2.6k
0
votes
1
reply
4.4k
views
Comment: C: How can I fix picard error: Sequences at index 0 don't match
6.1 years ago by Niek De Klein ★ 2.6k
0
votes
1
reply
4.4k
views
Comment: C: How can I fix picard error: Sequences at index 0 don't match
6.1 years ago by Niek De Klein ★ 2.6k
1
vote
6
replies
4.4k
views
How can I fix picard error: Sequences at index 0 don't match
picard GATK
6.1 years ago by Niek De Klein ★ 2.6k
7
votes
0
replies
2.1k
views
Answer: A: Epigenetics
updated 6.2 years ago by 44k • written 12.5 years ago by ★ 2.6k
0
votes
0
replies
9.2k
views
Comment: C: How to convert fastq to cram, and from cram back to fastq
6.2 years ago by Niek De Klein ★ 2.6k
0
votes
1
reply
9.2k
views
Comment: C: How to convert fastq to cram, and from cram back to fastq
6.2 years ago by Niek De Klein ★ 2.6k
10
votes
9
replies
9.2k
views
How to convert fastq to cram, and from cram back to fastq
cram fastq
updated 6.2 years ago by 16k • written 6.2 years ago by ★ 2.6k
2
votes
2
replies
2.0k
views
GaTK reverse select interval list
GATK intervallist
updated 7.2 years ago by 164k • written 7.2 years ago by ★ 2.6k
0
votes
1
reply
2.2k
views
Comment: C: Bedtools merge only part of feature that overlaps, not whole feature
7.3 years ago by Niek De Klein ★ 2.6k
4
votes
3
replies
2.2k
views
Bedtools merge only part of feature that overlaps, not whole feature
bedtools merge bed
updated 7.3 years ago by 36k • written 7.3 years ago by ★ 2.6k
1
vote
0
replies
1.6k
views
Answer: A: Get sequences from oligonucleotide probe ids
7.3 years ago by Niek De Klein ★ 2.6k
6
votes
3
replies
8.4k
views
Hisat R strandness aligning same strand as F strandness, how to do it correctly?
Hisat2 rna-seq alignment ribo-zero strandness
updated 7.3 years ago by ▴ 30 • written 8.4 years ago by ★ 2.6k
0
votes
1
reply
4.3k
views
Comment: C: Extremely low assigned reads in featureCounts
7.4 years ago by Niek De Klein ★ 2.6k
0
votes
0
replies
3.3k
views
Comment: C: How to add info to the sample columns of a VCF?
8.1 years ago by Niek De Klein ★ 2.6k
0
votes
1
reply
3.3k
views
Comment: C: How to add info to the sample columns of a VCF?
8.1 years ago by Niek De Klein ★ 2.6k
0
votes
4
replies
3.3k
views
How to add info to the sample columns of a VCF?
bcftools vcf
8.1 years ago by Niek De Klein ★ 2.6k
7
votes
4
replies
8.3k
views
How to remove non-unique mapping reads with Hisat?
alignment RNA-seq hisat
updated 23 months ago by 44k • written 9.4 years ago by ★ 2.6k
0
votes
2
replies
1.6k
views
Recognize rRNA remove protocol from gene expression profile
RNA-Seq ribozero poly-a
updated 9.0 years ago by 11k • written 9.0 years ago by ★ 2.6k
4
votes
2
replies
2.3k
views
biomaRt LPR region to position giving different results than I expect (using R)
ensembl biomaRt
updated 2.2 years ago by 44k • written 9.1 years ago by ★ 2.6k
2
votes
1
reply
5.1k
views
Showing both strands in IGV, or if not possible what genome viewer is good for strand specific experiments?
IGV genome-browser
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 2.6k
0
votes
0
replies
3.7k
views
Comment: C: Interperting k-mer plot of FastQC, how can I find out where k-mer enrichment com
9.2 years ago by Niek De Klein ★ 2.6k
5
votes
8
replies
3.7k
views
Interperting k-mer plot of FastQC, how can I find out where k-mer enrichment comes from?
fastqc next-gen k-mer
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 2.6k
0
votes
1
reply
3.7k
views
Comment: Comment: Interperting k-mer plot of FastQC, how can I find out where k-mer enrichment com
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 2.6k
0
votes
0
replies
3.7k
views
Comment: C: Interperting k-mer plot of FastQC, how can I find out where k-mer enrichment com
9.2 years ago by Niek De Klein ★ 2.6k
34
votes
1
reply
15k
views
What does secondary (and some other fields) mean in flagstat output?
flagstat samtools
updated 23 months ago by 44k • written 9.4 years ago by ★ 2.6k
0
votes
0
replies
14k
views
Comment: C: Comparison Of Soap And Bwa
9.5 years ago by Niek De Klein ★ 2.6k
0
votes
1
reply
5.7k
views
Comment: Comment: How does a skipped region from a CIGAR string (N) look in the alignment?
updated 22 months ago by 44k • written 9.5 years ago by ★ 2.6k
8
votes
3
replies
5.7k
views
How does a skipped region from a CIGAR string (N) look in the alignment?
CIGAR
updated 22 months ago by 44k • written 9.5 years ago by ★ 2.6k
10
votes
1
reply
3.7k
views
RNA-SeQC, EVER-seq, RSeQC and CollectRnaSeqMetrics, which to use and *why*?
RNA-Seq qc
updated 2.3 years ago by 44k • written 9.5 years ago by ★ 2.6k
8
votes
2
replies
12k
views
How To Convert .Mgf (Mascot Generic File) To A Format (Mzxml?) So That They Can Be Used With Maxquant?
mass-spec
updated 9.8 years ago by ▴ 90 • written 11.2 years ago by ★ 2.6k
20
votes
7
replies
4.6k
views
Program Or Script To Go From Partial Protein Sequence To Dna
translation protein translation coordinates
updated 10.6 years ago by 20 • written 14.1 years ago by ★ 2.6k
7
votes
8
replies
6.2k
views
Windows Cmd Not Responding With Python Blastall 2.2.17
python blast windows ncbi biopython
updated 10.7 years ago by 6.0k • written 14.1 years ago by ★ 2.6k
24
votes
8
replies
31k
views
When Using Heatmap.2 From R To Make A Heatmap Of Microarray Data, How Are The Genes Clustered?
microarray
updated 10.8 years ago by 104k • written 10.8 years ago by ★ 2.6k
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