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435
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mosdepth coverage & transcripts per million
TPM coverage metagenome mosdepth
21 months ago by lintonf • 0
0
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0
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450
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Combine gene annotations (from metagenomes) & gene coverage information into single file
coverage kofamscan metagenome annotation functional mosdepth
2.1 years ago by lintonf • 0
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0
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2.0k
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Comment: Comment: bbcms vs bbnorm when working with highly uneven coverage
2.9 years ago by lintonf • 0
1
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1
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2.0k
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High % of reads lost to chimera filtering in DADA2
16S amplicon DADA2 chimeras sequencing
updated 3.2 years ago by 35k • written 3.2 years ago by • 0
0
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0
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1.1k
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Comment: Comment: High % Reads w/ Nextera Transposase Adapter
3.2 years ago by lintonf • 0
1
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2
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1.1k
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High % Reads w/ Nextera Transposase Adapter
Transposase amplicon adapter Nextera sequencing
3.2 years ago by lintonf • 0
0
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1
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2.0k
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Comment: C: bbduk truncated fastq file according to FastQC - help?
4.2 years ago by lintonf • 0
4
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3
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2.0k
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bbduk truncated fastq file according to FastQC - help?
bbduk metagenome PE fastqc
updated 4.2 years ago by 14k • written 4.2 years ago by • 0
0
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1
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1.5k
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Comment: C: Losing most PE reads using Cutadapt on 150bp PE metagenomes
4.2 years ago by lintonf • 0
7
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4
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1.5k
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Losing most PE reads using Cutadapt on 150bp PE metagenomes
metagenome cutadapt pairedend PE shotgun
updated 4.2 years ago by 35k • written 4.2 years ago by • 0
2
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3
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1.9k
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Should I merge, then trim PE reads before multiple sequence alignment?
amplicon alignment MSA ITS1
updated 20 months ago by 44k • written 4.8 years ago by • 0
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