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394
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Finding percentage of a specific cell type in stromal vascular fraction online
macrophages markers T cells database SVF
22 months ago by salman_96 ▴ 70
3
votes
6
replies
1.8k
views
6 follow
Finding unique and identical rows between multiple columns of a data frame in R
identical unique rows R Dataframe
written 2.1 years ago by ▴ 70
3
votes
1
reply
672
views
How to download the metadata information form AE (array express)
metadata Arrayexpress
updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by ▴ 70
0
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0
replies
2.4k
views
Comment: Comment: Converting elements of a nested list into individual data frames in R
2.2 years ago by salman_96 ▴ 70
2
votes
1
reply
543
views
Merge/Join one data frame (X) to multiple data frames separately
join loop merge dataframe
updated 2.2 years ago by 13k • written 2.2 years ago by ▴ 70
0
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1
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2.4k
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Comment: Comment: Converting elements of a nested list into individual data frames in R
2.2 years ago by salman_96 ▴ 70
1
vote
4
replies
2.4k
views
Converting elements of a nested list into individual data frames in R
Nested Dataframe R list
2.2 years ago by salman_96 ▴ 70
0
votes
0
replies
524
views
Comment: Comment: Creating multiple phenotype datasets using bootstrap method "Bootstrap-samples-b
2.2 years ago by salman_96 ▴ 70
0
votes
1
reply
524
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Creating multiple phenotype datasets using bootstrap method "Bootstrap-samples-by-column-of-a-data-frame-in-r"
DEGs bootstrap
2.2 years ago by salman_96 ▴ 70
2
votes
12
replies
1.9k
views
Generating vcf files per individual instead of one big file from bam files
vcf bam variant
updated 20 months ago by 44k • written 2.2 years ago by ▴ 70
0
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0
replies
1.9k
views
Answer: Answer: Generating vcf files per individual instead of one big file from bam files
2.2 years ago by salman_96 ▴ 70
0
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0
replies
1.9k
views
Comment: Comment: Generating vcf files per individual instead of one big file from bam files
2.2 years ago by salman_96 ▴ 70
0
votes
1
reply
1.9k
views
Comment: Comment: Generating vcf files per individual instead of one big file from bam files
2.2 years ago by salman_96 ▴ 70
0
votes
0
replies
1.9k
views
Comment: Comment: Generating vcf files per individual instead of one big file from bam files
2.2 years ago by salman_96 ▴ 70
0
votes
0
replies
1.9k
views
Comment: Comment: Generating vcf files per individual instead of one big file from bam files
2.2 years ago by salman_96 ▴ 70
0
votes
2
replies
1.9k
views
Comment: Comment: Generating vcf files per individual instead of one big file from bam files
2.2 years ago by salman_96 ▴ 70
0
votes
1
reply
1.9k
views
Comment: Comment: Generating vcf files per individual instead of one big file from bam files
2.2 years ago by salman_96 ▴ 70
0
votes
1
reply
1.9k
views
Comment: Comment: Generating vcf files per individual instead of one big file from bam files
2.2 years ago by salman_96 ▴ 70
2
votes
3
replies
861
views
Ending up with only one BAM file
bam variant-calling star
updated 20 months ago by 44k • written 2.3 years ago by ▴ 70
4
votes
4
replies
1.2k
views
Multiple exposure timelines (time-points) in one DESeq2 object or multiple DESeq objects
time points exposure drug DEGs multiple DESEQ2
updated 2.4 years ago by 20k • written 2.4 years ago by ▴ 70
0
votes
1
reply
893
views
Comment: Comment: DESEQ2 study design for different time points between controls and high dose sam
2.4 years ago by salman_96 ▴ 70
0
votes
0
replies
893
views
Comment: Comment: DESEQ2 study design for different time points between controls and high dose sam
2.4 years ago by salman_96 ▴ 70
5
votes
4
replies
893
views
DESEQ2 study design for different time points between controls and high dose samples.
drug DEGs DESEQ2 exposure
updated 2.4 years ago by ★ 2.0k • written 2.4 years ago by ▴ 70
0
votes
1
reply
554
views
bwa mem for multiple paired read samples FastQfiles
fastq reads mem bwa paired
updated 2.4 years ago by 164k • written 2.4 years ago by ▴ 70
2
votes
1
reply
625
views
Locating SNPs from genes of interest in VCF
vcf snps bcftools mpileup
updated 17 months ago by 44k • written 2.4 years ago by ▴ 70
4
votes
2
replies
782
views
Is there any way to normalize a sample with high number of reads assigned to it?
fastp sequencing depth RSEM STAR
updated 2.5 years ago by 21k • written 2.5 years ago by ▴ 70
2
votes
3
replies
1.9k
views
Reporting results from fastp Read GC content
fastp MultiQC PE sequencing GC
2.5 years ago by salman_96 ▴ 70
0
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0
replies
1.9k
views
Comment: Comment: Reporting results from fastp Read GC content
2.5 years ago by salman_96 ▴ 70
0
votes
0
replies
1.9k
views
Comment: Comment: Reporting results from fastp Read GC content
2.5 years ago by salman_96 ▴ 70
0
votes
1
reply
568
views
Extracting genomic coordinates for a Variant calling pipeline
VCF Genomic-coordinates Samtools Variant-calling
updated 17 months ago by 44k • written 2.5 years ago by ▴ 70
2
votes
2
replies
1.5k
views
Donwloading latest version of Mouse ref genome
Mus-musculus Ensembl Reference-genome
updated 20 months ago by 44k • written 2.5 years ago by ▴ 70
0
votes
1
reply
543
views
Which DeSeq2 study design to use when there is data from controls and two different disease states (moderate and high) and stage level (1,2,3)? And h…
design Bioconductor R Study DeSeq2
updated 2.5 years ago by 13k • written 2.6 years ago by ▴ 70
0
votes
3
replies
1.0k
views
Recommendation for pathway analysis
Analysis Pathway
updated 3.1 years ago by 85k • written 3.1 years ago by ▴ 70
2
votes
4
replies
1.8k
views
How to cite a pathway from WikiPathways in text and in references in APA format
wikipathways
written 3.5 years ago by ▴ 70
3
votes
8
replies
5.5k
views
Plink update name flag, setting column names
plink update-name
updated 3.5 years ago by 12k • written 3.6 years ago by ▴ 70
2
votes
3
replies
1.1k
views
Changing length of x axis on ggplot
r ggplot ggplot2
updated 3.5 years ago by ▴ 90 • written 3.5 years ago by ▴ 70
0
votes
3
replies
2.1k
views
Possible to remove .nosex IDs in Plink1.9
--allow-no-sex --must-have-sex plink1.9
3.5 years ago by salman_96 ▴ 70
0
votes
0
replies
2.1k
views
Answer: Answer: Possible to remove .nosex IDs in Plink1.9
3.5 years ago by salman_96 ▴ 70
0
votes
0
replies
2.1k
views
Comment: Comment: Possible to remove .nosex IDs in Plink1.9
3.5 years ago by salman_96 ▴ 70
0
votes
0
replies
5.5k
views
Comment: Comment: Plink update name flag, setting column names
3.5 years ago by salman_96 ▴ 70
0
votes
1
reply
5.5k
views
Comment: Comment: Plink update name flag, setting column names
3.5 years ago by salman_96 ▴ 70
0
votes
1
reply
1.7k
views
Comment: Comment: Possible to merge three plink bim, bed and fam files?
3.6 years ago by salman_96 ▴ 70
0
votes
1
reply
5.5k
views
Comment: Comment: Plink update name flag, setting column names
updated 3.5 years ago by 12k • written 3.6 years ago by ▴ 70
0
votes
5
replies
1.3k
views
Merging two linux files based on same rows
rsID coordinates plinkfile Merge
updated 3.6 years ago by 147k • written 3.6 years ago by ▴ 70
0
votes
1
reply
975
views
Comment: Comment: Getting Null in sink file when running lme in R using python to generate multipl
3.6 years ago by salman_96 ▴ 70
1
vote
2
replies
975
views
Getting Null in sink file when running lme in R using python to generate multiple R codes
R python lme sink
updated 3.6 years ago by 44k • written 3.6 years ago by ▴ 70
2
votes
2
replies
903
views
Remove all rows that begin with characters and keep only those that begin with numbers in Linux.
hg19 linux
updated 3.6 years ago by 35k • written 3.6 years ago by ▴ 70
0
votes
1
reply
979
views
Comment: Comment: Obtaining required rows from HG19 file with R or Linux
updated 3.6 years ago by 44k • written 3.6 years ago by ▴ 70
0
votes
1
reply
1.7k
views
Comment: Comment: Possible to merge three plink bim, bed and fam files?
3.6 years ago by salman_96 ▴ 70
0
votes
3
replies
979
views
Obtaining required rows from HG19 file with R or Linux
hg19
updated 3.6 years ago by 44k • written 3.6 years ago by ▴ 70
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