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How to create a proper design matrix/contrast matrix for methylation 850k analysis in limma?
850k methylation analysis R limma design matrix
updated 3.5 years ago by • 0 • written 4.9 years ago by ▴ 130
1
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Comment: Comment: Question regarding TCGA and TCGAbiolinks --> RNAseq data as HTseq-Counts, FPKM,
3.8 years ago by mario.red8976 ▴ 130
2
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2
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2.7k
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Question regarding TCGA and TCGAbiolinks --> RNAseq data as HTseq-Counts, FPKM, FPKM-UQ
RNAseq FPKM-UQ FPKM TCGAbiolinks TCGA
3.8 years ago by mario.red8976 ▴ 130
0
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3
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719
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Problem installing bioconductor package 'sesameData' (R 4.0, Bioc 3.12)
R bioconductor sesameData sesame TCGAbiolinks
3.8 years ago by mario.red8976 ▴ 130
0
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0
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719
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Comment: C: Problem installing bioconductor package 'sesameData '
3.8 years ago by mario.red8976 ▴ 130
0
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1
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2.3k
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Comment: C: RnBeads error running rnb.run.dj()
3.8 years ago by mario.red8976 ▴ 130
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0
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1.4k
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Answer: A: how to debug error in RnBeads Mac mini 10.15.7 R 4.0.3
3.8 years ago by mario.red8976 ▴ 130
2
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5
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2.3k
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RnBeads error running rnb.run.dj()
ngs rnbeads methylation
updated 21 months ago by 44k • written 3.9 years ago by ▴ 130
0
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0
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2.3k
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Comment: C: RnBeads error loading the GUI
3.9 years ago by mario.red8976 ▴ 130
0
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1
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2.2k
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Comment: C: How to export molecular action between nodes from String PPI network?
4.4 years ago by mario.red8976 ▴ 130
0
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3
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2.2k
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How to export molecular action between nodes from String PPI network?
PPI network string systems-biology
updated 18 months ago by 44k • written 4.4 years ago by ▴ 130
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1
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15k
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Comment: C: Combining GSEA (Gene Set Enrichment analysis) and DEG (Differentially Expressed
4.4 years ago by mario.red8976 ▴ 130
3
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1
reply
15k
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Comment: C: Combining GSEA (Gene Set Enrichment analysis) and DEG (Differentially Expressed
4.4 years ago by mario.red8976 ▴ 130
4
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3
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15k
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Answer: A: Combining GSEA (Gene Set Enrichment analysis) and DEG (Differentially Expressed
4.4 years ago by mario.red8976 ▴ 130
1
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1
reply
1.9k
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Answer: A: DNA methylation integrated package
4.7 years ago by mario.red8976 ▴ 130
0
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0
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6.2k
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Comment: C: How to do Disease-Free survival analysis with TCGA data ??
4.7 years ago by mario.red8976 ▴ 130
0
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1
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6.2k
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Comment: C: How to do Disease-Free survival analysis with TCGA data ??
4.7 years ago by mario.red8976 ▴ 130
2
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8
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6.2k
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How to do Disease-Free survival analysis with TCGA data ??
tcga survival analysis disease-free survival R
updated 2.5 years ago by 44k • written 4.7 years ago by ▴ 130
1
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1
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6.5k
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Answer: A: Appropriate Pipeline for Methylation EPIC array analysis?
4.7 years ago by mario.red8976 ▴ 130
0
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0
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2.0k
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Comment: A: What is the best way to analyze and enrich a list of DE genes from RNAseq?
4.7 years ago by mario.red8976 ▴ 130
2
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4
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2.0k
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What is the best way to analyze and enrich a list of DE genes from RNAseq?
R pathways enrichment RNA-Seq
updated 18 months ago by 44k • written 4.7 years ago by ▴ 130
1
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0
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1.8k
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Answer: A: How to check for the presence/absence of unique rows in two different matrices?
4.9 years ago by mario.red8976 ▴ 130
2
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4
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1.8k
views
How to check for the presence/absence of unique rows in two different matrices?
R RStudio matrix
updated 18 months ago by 44k • written 4.9 years ago by ▴ 130
0
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0
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1.8k
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Comment: Comment: How to check for the presence/absence of unique rows in two different matrices?
4.9 years ago by mario.red8976 ▴ 130
0
votes
0
replies
2.7k
views
Comment: A: How to create a proper design matrix/contrast matrix for methylation 850k analys
4.9 years ago by mario.red8976 ▴ 130
0
votes
1
reply
2.7k
views
Comment: A: How to create a proper design matrix/contrast matrix for methylation 850k analys
4.9 years ago by mario.red8976 ▴ 130
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