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0
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489
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Comment: Comment: Computational way to distinguish between polyA and total RNA bulk RNA-seq
8 days ago by predeus ★ 2.1k
3
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3
replies
489
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Computational way to distinguish between polyA and total RNA bulk RNA-seq
RNA-seq
8 days ago by predeus ★ 2.1k
5
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4
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5.9k
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Kraken2 with Nanopore reads
kraken2 nanopore kraken
updated 4 months ago by ▴ 80 • written 3.5 years ago by ★ 2.1k
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0
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1.1k
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Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
6 months ago by predeus ★ 2.1k
0
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1
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1.1k
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Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
6 months ago by predeus ★ 2.1k
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0
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2.4k
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Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
6 months ago by predeus ★ 2.1k
1
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1
reply
1.1k
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Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
6 months ago by predeus ★ 2.1k
0
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1
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1.1k
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Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
6 months ago by predeus ★ 2.1k
3
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11
replies
1.1k
views
Reporting of multimapping reads by STAR and Hisat2
STAR Hisat2 multimapper
updated 6 months ago by ★ 1.3k • written 6 months ago by ★ 2.1k
1
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0
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229
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Codon usage bias analysis when comparing RNA-seq and proteome
rna-seq proteome codon-usage-bias
6 months ago by predeus ★ 2.1k
0
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1
reply
505
views
10x VDJ (TCR/BCR) BAM to fastq
TCR VDJ BCR 10x
updated 8 months ago by 148k • written 8 months ago by ★ 2.1k
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1
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10k
views
Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
9 months ago by predeus ★ 2.1k
0
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1
reply
10k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
9 months ago by predeus ★ 2.1k
0
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0
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18k
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Comment: Comment: Issues installing bcl2fastq?
9 months ago by predeus ★ 2.1k
2
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2
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18k
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Answer: Answer: Issues installing bcl2fastq?
10 months ago by predeus ★ 2.1k
0
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0
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945
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Comment: Comment: API way to find "Original submitter" files in SRA?
10 months ago by predeus ★ 2.1k
2
votes
5
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945
views
API way to find "Original submitter" files in SRA?
fastq SRA
10 months ago by predeus ★ 2.1k
1
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0
replies
945
views
Answer: Answer: API way to find "Original submitter" files in SRA?
10 months ago by predeus ★ 2.1k
0
votes
1
reply
945
views
Comment: Comment: API way to find "Original submitter" files in SRA?
10 months ago by predeus ★ 2.1k
0
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0
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2.0k
views
Answer: Answer: Get original format information from SRA metadata
10 months ago by predeus ★ 2.1k
0
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0
replies
1.3k
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Comment: Comment: Samtools filtering based on PNEXT
14 months ago by predeus ★ 2.1k
0
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1
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1.3k
views
Comment: Comment: Samtools filtering based on PNEXT
14 months ago by predeus ★ 2.1k
1
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7
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1.3k
views
Samtools filtering based on PNEXT
CRAM filtering samtools SAM BAM
updated 14 months ago by 102k • written 14 months ago by ★ 2.1k
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0
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1.3k
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Comment: Comment: Samtools filtering based on PNEXT
14 months ago by predeus ★ 2.1k
0
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1
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4.0k
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Comment: Comment: Basecalling with dorado
14 months ago by predeus ★ 2.1k
0
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0
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3.4k
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Comment: Comment: Bacterial morphology details
16 months ago by predeus ★ 2.1k
3
votes
1
reply
924
views
R package to link NCBI taxonomy ID to bacterial properties (Gram stain, aerobe/anaerobe, etc)
R NCBI bacteria taxonomy
updated 16 months ago by 8.8k • written 16 months ago by ★ 2.1k
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0
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1.2k
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Answer: Answer: SRA obtained metagenomic reads appears to corrupt - cannot work on SingleM
16 months ago by predeus ★ 2.1k
2
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0
replies
907
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Answer: Answer: How can I figure out where a mouse (C57BL/6J) genome is heterozygous?
16 months ago by predeus ★ 2.1k
0
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0
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982
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Comment: Comment: snRNA seq analysis - huge computational demand due to large number of entries
16 months ago by predeus ★ 2.1k
0
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1
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982
views
Answer: Answer: snRNA seq analysis - huge computational demand due to large number of entries
17 months ago by predeus ★ 2.1k
0
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0
replies
2.1k
views
Comment: Comment: Merge BAM files from (totally) different references
17 months ago by predeus ★ 2.1k
0
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0
replies
2.1k
views
Comment: Comment: Merge BAM files from (totally) different references
17 months ago by predeus ★ 2.1k
0
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1
reply
2.1k
views
Comment: Comment: Merge BAM files from (totally) different references
17 months ago by predeus ★ 2.1k
0
votes
1
reply
2.1k
views
Comment: Comment: Merge BAM files from (totally) different references
17 months ago by predeus ★ 2.1k
0
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0
replies
2.1k
views
Comment: Comment: Merge BAM files from (totally) different references
17 months ago by predeus ★ 2.1k
1
vote
13
replies
2.1k
views
Merge BAM files from (totally) different references
bam ngs mapping
17 months ago by predeus ★ 2.1k
0
votes
1
reply
2.1k
views
Comment: Comment: Merge BAM files from (totally) different references
17 months ago by predeus ★ 2.1k
0
votes
0
replies
578
views
Comment: Comment: Clustered bacterial RefSeq?
17 months ago by predeus ★ 2.1k
2
votes
2
replies
578
views
Clustered bacterial RefSeq?
refseq clustering ANI bacteria
17 months ago by predeus ★ 2.1k
0
votes
1
reply
907
views
Comment: Comment: bbduk.sh trimmer with multiple input files
18 months ago by predeus ★ 2.1k
1
vote
3
replies
907
views
bbduk.sh trimmer with multiple input files
bbduk bbmap bbtools
updated 18 months ago by 148k • written 18 months ago by ★ 2.1k
0
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0
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2.3k
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Comment: Comment: Whole blood single cell RNA-seq dataset?
20 months ago by predeus ★ 2.1k
0
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0
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3.8k
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Answer: Answer: HISAT2 relaxing parameters?
20 months ago by predeus ★ 2.1k
3
votes
3
replies
1.8k
views
Read counting in RSEM and Salmon (alignment mode)
quantification RSEM RNA-seq Salmon
20 months ago by predeus ★ 2.1k
2
votes
0
replies
1.8k
views
Answer: Answer: Read counting in RSEM and Salmon (alignment mode)
20 months ago by predeus ★ 2.1k
1
vote
0
replies
1.8k
views
Comment: Comment: Read counting in RSEM and Salmon (alignment mode)
20 months ago by predeus ★ 2.1k
0
votes
0
replies
476
views
Add HI:i:<n> tag to a BAM file
SAM hisat2 STAR tag BAM
21 months ago by predeus ★ 2.1k
2
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0
replies
1.1k
views
Comment: Comment: To batch correct or analyse separately?
23 months ago by predeus ★ 2.1k
0
votes
2
replies
2.1k
views
Comment: Comment: Automated way to pull representative/RefSeq genome using full species name?
2.1 years ago by predeus ★ 2.1k
289 results • Page 1 of 6
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