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Comment: C: Principal Component Analysis PCA
5.3 years ago by predeus ★ 2.1k
1
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0
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3.2k
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Answer: A: Best strategy to get GO terms for a proteome?
5.3 years ago by predeus ★ 2.1k
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0
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1.4k
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Comment: C: Eukaryotic gene annotation on gene predictions
5.3 years ago by predeus ★ 2.1k
7
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5
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1.4k
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Eukaryotic gene annotation on gene predictions
annotation eukaryotic gene prediction
updated 5.3 years ago by 20 • written 5.4 years ago by ★ 2.1k
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0
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1.4k
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Comment: C: Eukaryotic gene annotation on gene predictions
5.4 years ago by predeus ★ 2.1k
0
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0
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3.4k
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Comment: C: RepeatModeler finishes without creating output files
5.4 years ago by predeus ★ 2.1k
0
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0
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3.9k
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Answer: A: RepeatMasker on new species
5.4 years ago by predeus ★ 2.1k
1
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0
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9.4k
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Comment: C: samtools markdup vs PICARD's MarkDuplicates when removing duplicated reads
5.4 years ago by predeus ★ 2.1k
4
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2
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9.4k
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Answer: A: samtools markdup vs PICARD's MarkDuplicates when removing duplicated reads
5.4 years ago by predeus ★ 2.1k
1
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0
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1.4k
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Answer: A: Is there some good software to align/compare fasta sequences in my PC
5.4 years ago by predeus ★ 2.1k
0
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0
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944
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Answer: A: Looking for the best plot for overlapping features
5.4 years ago by predeus ★ 2.1k
4
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0
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7.1k
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Answer: A: How to circularize genome assemblies
5.5 years ago by predeus ★ 2.1k
0
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0
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8.1k
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Comment: C: Batch effect correction
5.6 years ago by predeus ★ 2.1k
0
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0
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3.5k
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Comment: C: Is computing TPM from read count from DEseq2 count matrix necessary?
5.6 years ago by predeus ★ 2.1k
1
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0
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2.0k
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Answer: A: When will the HG 19/ GRC37 finally become obsolete
5.6 years ago by predeus ★ 2.1k
1
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0
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6.4k
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Answer: A: which matrix should be used to draw heatmap in RNAseq?
5.6 years ago by predeus ★ 2.1k
0
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0
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1.5k
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Comment: C: Interpretation of several pairwise overlaps
5.6 years ago by predeus ★ 2.1k
0
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0
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1.2k
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Answer: A: Number of genes in a kegg pathway
5.6 years ago by predeus ★ 2.1k
0
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1
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3.4k
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Comment: A: .sra to bam conversion results in a "< myfile > does not have BAM or CRAM format
5.6 years ago by predeus ★ 2.1k
2
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0
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3.5k
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Answer: A: Is computing TPM from read count from DEseq2 count matrix necessary?
5.6 years ago by predeus ★ 2.1k
1
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0
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1.5k
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Comment: C: htseq-count cannot locate gff
5.6 years ago by predeus ★ 2.1k
1
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0
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4.0k
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Answer: A: Hybrid assembly using MinION data + correction with Illumina. Which strategy to
5.6 years ago by predeus ★ 2.1k
0
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1
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1.5k
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Answer: A: Interpretation of several pairwise overlaps
5.6 years ago by predeus ★ 2.1k
0
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1
reply
1.5k
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Comment: C: htseq-count cannot locate gff
5.6 years ago by predeus ★ 2.1k
5
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1
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8.1k
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Answer: A: Batch effect correction
5.6 years ago by predeus ★ 2.1k
2
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0
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2.4k
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Answer: A: plasmid recovery from hybrid assembly
5.6 years ago by predeus ★ 2.1k
1
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0
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14k
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Comment: C: Modern software for whole genome alignment visualization
5.6 years ago by predeus ★ 2.1k
25
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25
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14k
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11 follow
Modern software for whole genome alignment visualization
visualization whole-genome alignment mauve harvest
updated 5.6 years ago by • 0 • written 6.8 years ago by ★ 2.1k
0
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0
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962
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Answer: A: Best way to search for presence of gene in whole genome of related species
5.6 years ago by predeus ★ 2.1k
0
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1
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2.1k
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Answer: A: How to find correspondence between GSM and all SRA identifiers (SRR DRR ERR) ?
5.6 years ago by predeus ★ 2.1k
1
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0
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2.2k
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Comment: C: Programs for bacterial gene prediction/annotation for nanopore assembly?
5.6 years ago by predeus ★ 2.1k
1
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1
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2.2k
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Comment: C: Programs for bacterial gene prediction/annotation for nanopore assembly?
5.6 years ago by predeus ★ 2.1k
3
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1
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2.2k
views
Answer: A: Programs for bacterial gene prediction/annotation for nanopore assembly?
5.6 years ago by predeus ★ 2.1k
16
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7
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11k
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Get a complete GSM-to-SRX/SRR table
GEO SRA GSM GSE SRAdb
updated 5.6 years ago by ▴ 60 • written 7.8 years ago by ★ 2.1k
0
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0
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4.5k
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Comment: C: Combining HMMs and fasta for HMMER searches
5.6 years ago by predeus ★ 2.1k
12
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6
replies
9.4k
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Racon-Illumina or Pilon?
Assembly nanopore polishing
updated 5.7 years ago by ▴ 40 • written 6.6 years ago by ★ 2.1k
0
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0
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6.8k
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Comment: C: STAR for bacterial genome
5.8 years ago by predeus ★ 2.1k
1
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0
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6.4k
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Answer: A: Is There A Tool To Visualize Sequence Graphs?
5.8 years ago by predeus ★ 2.1k
0
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0
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6.8k
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Comment: C: STAR for bacterial genome
5.8 years ago by predeus ★ 2.1k
0
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1
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6.8k
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Comment: C: STAR for bacterial genome
5.8 years ago by predeus ★ 2.1k
8
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6
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2.6k
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Using Bandage to finish ambiguous long-read assembly?
Assembly Bandage long reads Unicycler
updated 5.9 years ago by 20 • written 6.0 years ago by ★ 2.1k
1
vote
1
reply
17k
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Comment: C: Best RNA-Seq aligner: A comparison of mapping tools
5.9 years ago by predeus ★ 2.1k
3
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2
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17k
views
Comment: C: Best RNA-Seq aligner: A comparison of mapping tools
5.9 years ago by predeus ★ 2.1k
1
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0
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2.6k
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Comment: C: Using Bandage to finish ambiguous long-read assembly?
6.0 years ago by predeus ★ 2.1k
0
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0
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2.6k
views
Comment: C: Using Bandage to finish ambiguous long-read assembly?
6.0 years ago by predeus ★ 2.1k
1
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1
reply
2.6k
views
Comment: C: Using Bandage to finish ambiguous long-read assembly?
6.0 years ago by predeus ★ 2.1k
1
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0
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54k
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Comment: C: How Can I Convert Bam/Sam To Wiggle
6.1 years ago by predeus ★ 2.1k
0
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0
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4.1k
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Answer: A: What Is The Best Way To Detect Mitochondrial/Chloroplast Genomes From Assembled
6.1 years ago by predeus ★ 2.1k
0
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0
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3.3k
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Comment: C: Where and how NGS techniques are heading for the next 5 years?
6.1 years ago by predeus ★ 2.1k
0
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0
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2.2k
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Comment: C: What would be the trend in next few years in NGS era?
6.1 years ago by predeus ★ 2.1k
289 results • Page 4 of 6
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