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5
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4
replies
6.5k
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How to obtain distinct/uniqe rows from GenomicRanges object
R GenomicRanges bioconductor
updated 16 months ago by 45k • written 5.8 years ago by ▴ 380
0
votes
1
reply
939
views
Comment: Comment: How reliable is Alphafold2 for folding random-coil peptide
3.1 years ago by gundalav ▴ 380
3
votes
3
replies
939
views
How reliable is Alphafold2 for folding random-coil peptide
alphafold2 peptide protein
updated 3.1 years ago by ★ 29k • written 3.1 years ago by ▴ 380
0
votes
0
replies
1.0k
views
Comment: Comment: How to recover gene expression used for scran::pairwiseTTests()
3.1 years ago by gundalav ▴ 380
3
votes
2
replies
1.0k
views
How to recover gene expression used for scran::pairwiseTTests()
scran singlecell rnaseq
3.1 years ago by gundalav ▴ 380
0
votes
0
replies
1.1k
views
How to interpret scRNA-Seq cell dynamics from scVelo and CytoTrace results
velocyto cell cytotrace rnaseq dynamics
3.8 years ago by gundalav ▴ 380
0
votes
0
replies
651
views
How to show that one docking is better than another with Pymol visually
docking structure pymol pdb
3.8 years ago by gundalav ▴ 380
0
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0
replies
1.0k
views
Comment: Comment: Which error bar to use to show gene expression from single-cell RNAseq data
3.8 years ago by gundalav ▴ 380
0
votes
1
reply
1.0k
views
Which error bar to use to show gene expression from single-cell RNAseq data
expression rnaseq statistics gene single-cell
3.8 years ago by gundalav ▴ 380
2
votes
1
reply
2.1k
views
Appropriate statistical test for comparing two samples in single-cell RNAseq
monocle3 expression differential single-cell rna-seq
updated 3.8 years ago by 87k • written 3.8 years ago by ▴ 380
0
votes
0
replies
634
views
How to calculate RMSD and binding energy from the already docked ligand-receptor
python protein docking pdb structure
3.9 years ago by gundalav ▴ 380
4
votes
1
reply
2.5k
views
How to tell if enrichment is good or bad from GSEA plot
genes gsea enrichment
updated 3.9 years ago by 89k • written 3.9 years ago by ▴ 380
0
votes
0
replies
1.0k
views
Programmatically adding hydrogen and remove water to multiple PDB files
docking pdb python structure
3.9 years ago by gundalav ▴ 380
0
votes
1
reply
1.7k
views
Comment: Comment: On whether or not to normalize scRNAseq expression like qPCR
3.9 years ago by gundalav ▴ 380
0
votes
1
reply
2.7k
views
Comment: Comment: How to determine reasonable expression threshold for of a gene from scRNAseq to
3.9 years ago by gundalav ▴ 380
0
votes
2
replies
2.7k
views
Comment: Comment: How to determine reasonable expression threshold for of a gene from scRNAseq to
3.9 years ago by gundalav ▴ 380
7
votes
5
replies
1.7k
views
On whether or not to normalize scRNAseq expression like qPCR
single-cell qpcr rnaseq
updated 3.9 years ago by 21k • written 3.9 years ago by ▴ 380
1
vote
1
reply
2.7k
views
Comment: Comment: How to determine reasonable expression threshold for of a gene from scRNAseq to
3.9 years ago by gundalav ▴ 380
0
votes
3
replies
2.7k
views
Comment: Comment: How to determine reasonable expression threshold for of a gene from scRNAseq to
3.9 years ago by gundalav ▴ 380
13
votes
12
replies
2.7k
views
How to determine reasonable expression threshold for of a gene from scRNAseq to imply its biological significance
statistics single-cell rnaseq
3.8 years ago by gundalav ▴ 380
1
vote
1
reply
1.8k
views
How to tell if our ligand-protein docking is good from AutoDock Vina's result
protein-structure vina autodock docking pdb
updated 3.9 years ago by ★ 29k • written 3.9 years ago by ▴ 380
1
vote
2
replies
1.9k
views
How to extract subset of protein structure (PDB format) file based on a subsequence of protein
protein pdb python r
updated 3.9 years ago by ▴ 390 • written 3.9 years ago by ▴ 380
0
votes
0
replies
1.5k
views
Filtering criteria for selecting DEGs from Monocle3 regression analysis with categorical terms
RNA-Seq monocle differential-expression
5.4 years ago by gundalav ▴ 380
1
vote
1
reply
1.2k
views
How to remove the squished track in Give AlignmentTrack()
RNA-Seq
updated 6.0 years ago by ▴ 30 • written 6.9 years ago by ▴ 380
6
votes
6
replies
8.9k
views
How to add RG tag into the optional field in a BAM file
sequencing single-cell bam samtools
updated 6.9 years ago by 16k • written 6.9 years ago by ▴ 380
0
votes
1
reply
8.9k
views
Comment: C: How to add RG tags in a single cell BAM file where each group indicate barcode
6.9 years ago by gundalav ▴ 380
16
votes
10
replies
22k
views
7 follow
Creating Barplot With Horizontal Marker And Asterisks For Biological Paper
plot r
updated 7.2 years ago by ▴ 10 • written 11.5 years ago by ▴ 380
3
votes
1
reply
4.2k
views
How to show all columns after performing GenomicRanges::subsetByOverlaps
R bioconductor genomicrange gwas
updated 7.4 years ago by 27k • written 7.4 years ago by ▴ 380
5
votes
2
replies
3.9k
views
Can or should we perform feature counting with `bedtools intersect -c`?
bedtools rna-seq featureCounts
7.7 years ago by gundalav ▴ 380
0
votes
0
replies
3.9k
views
Comment: C: Can or should we perform feature counting with `bedtools intersect -c`?
7.7 years ago by gundalav ▴ 380
0
votes
1
reply
5.8k
views
Comment: C: How to recover treated/control count from DESeq2 output
8.0 years ago by gundalav ▴ 380
11
votes
4
replies
5.8k
views
How to recover treated/control count from DESeq2 output
RNA-Seq DSeq2
updated 8.0 years ago by 8.4k • written 8.0 years ago by ▴ 380
4
votes
17
replies
12k
views
How to calculate RPKM from featureCounts output
RNA-Seq
updated 8.2 years ago by ★ 3.5k • written 8.2 years ago by ▴ 380
0
votes
1
reply
12k
views
Comment: C: How to calculate RPKM from featureCounts output
8.2 years ago by gundalav ▴ 380
0
votes
1
reply
12k
views
Comment: C: How to calculate RPKM from featureCounts output
8.2 years ago by gundalav ▴ 380
0
votes
1
reply
12k
views
Comment: C: How to calculate RPKM from featureCounts output
8.2 years ago by gundalav ▴ 380
2
votes
5
replies
2.1k
views
Problem Converting BAM to SAM on to Amazon-S3 Using Samtools
samtools amazon-web-services amazon-ec2 amazon-s3
updated 8.2 years ago by 105k • written 8.2 years ago by ▴ 380
0
votes
1
reply
6.5k
views
Comment: C: TrimGalore parameter form Nextera paired-end reads adapter removal
8.2 years ago by gundalav ▴ 380
4
votes
4
replies
6.5k
views
TrimGalore parameter form Nextera paired-end reads adapter removal
adapter sequencing illumina trimming nextera
updated 8.2 years ago by 105k • written 8.2 years ago by ▴ 380
0
votes
0
replies
5.2k
views
Comment: C: Why mapping rate is low after adapter trimming paired-end data?
8.2 years ago by gundalav ▴ 380
3
votes
6
replies
5.2k
views
Why mapping rate is low after adapter trimming paired-end data?
sequencing alignment adapter cutadapt trim_galore
updated 8.2 years ago by 15k • written 8.2 years ago by ▴ 380
0
votes
0
replies
5.2k
views
Comment: C: Why mapping rate is low after adapter trimming paired-end data?
8.2 years ago by gundalav ▴ 380
4
votes
6
replies
2.6k
views
How Useful Is Non-Mapping Based Reads Classification?
next-gen classification alignment mapping cancer
updated 8.3 years ago by 20 • written 12.4 years ago by ▴ 380
0
votes
1
reply
2.0k
views
Mirna Disease Annotated Corpus
annotation
updated 2.2 years ago by 45k • written 11.8 years ago by ▴ 380
2
votes
4
replies
3.1k
views
How to obtain insert sequence from paired-end mapping result (SAM/BAM)
RNA-Seq bowtie2 alignment samtools
updated 8.6 years ago by ★ 3.0k • written 8.7 years ago by ▴ 380
0
votes
1
reply
3.1k
views
Comment: C: How to obtain insert sequence from paired-end mapping result (SAM/BAM)
8.7 years ago by gundalav ▴ 380
1
vote
1
reply
2.0k
views
Method to detect gene co-expression of genomic feature in cell lineage
microarray clustering RNA-Seq
updated 2.3 years ago by 45k • written 9.9 years ago by ▴ 380
0
votes
1
reply
2.2k
views
Your Favorite Mirna-Gene Concordance Database Resource
gene-annotation mirna
updated 2.2 years ago by 45k • written 12.3 years ago by ▴ 380
1
vote
1
reply
2.3k
views
Non-Immune cell type gene expression database
database
updated 11.0 years ago by 11k • written 11.0 years ago by ▴ 380
19
votes
9
replies
6.4k
views
6 follow
Best Practice For Extracting Gene Names From Pubmed Abstracts
pubmed
updated 11.1 years ago by 166k • written 12.3 years ago by ▴ 380
71 results • Page 1 of 2
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