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Comment: Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
17 months ago by pingu77 ▴ 40
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Comment: Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
17 months ago by pingu77 ▴ 40
0
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0
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1.5k
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Comment: Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
17 months ago by pingu77 ▴ 40
0
votes
1
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1.5k
views
Comment: Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
17 months ago by pingu77 ▴ 40
1
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8
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1.5k
views
DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
rna-seq deseq2
17 months ago by pingu77 ▴ 40
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1
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1.0k
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map Ensembl gene ID from hg19 to hg38
biomart ensembl
updated 18 months ago by ★ 2.4k • written 18 months ago by ▴ 40
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0
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471
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cell density scRNAseq
contourPlot scRNAseq
2.0 years ago by pingu77 ▴ 40
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0
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1.1k
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Comment: Comment: difference between target sequencing technologies
2.2 years ago by pingu77 ▴ 40
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1
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1.1k
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Comment: Comment: difference between target sequencing technologies
2.2 years ago by pingu77 ▴ 40
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4
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1.1k
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difference between target sequencing technologies
capture sequencing hybrid wes
2.2 years ago by pingu77 ▴ 40
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1
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1.5k
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Comment: Comment: understand the gene result in ncbi
2.3 years ago by pingu77 ▴ 40
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1
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1.5k
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Comment: Comment: understand the gene result in ncbi
2.3 years ago by pingu77 ▴ 40
6
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6
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1.5k
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understand the gene result in ncbi
ncbi cdna gene
updated 2.3 years ago by ★ 29k • written 2.3 years ago by ▴ 40
3
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1
reply
956
views
bedtools no strand information - fasta file
bedtools fasta sequence
updated 22 months ago by 45k • written 2.3 years ago by ▴ 40
7
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2
replies
1.1k
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genotypes - somatic data
genotype caller data somatic variant
updated 2.4 years ago by 5.1k • written 2.4 years ago by ▴ 40
3
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4
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5.0k
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different result using minimap2 and pbmm2
pbmm2 minimap2 pacbio samtools
updated 2.4 years ago by ▴ 410 • written 3.0 years ago by ▴ 40
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0
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1.2k
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Comment: Comment: minimum number of genes - gene ontology/reactome analysis
2.4 years ago by pingu77 ▴ 40
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1
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1.2k
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Comment: Comment: minimum number of genes - gene ontology/reactome analysis
2.4 years ago by pingu77 ▴ 40
0
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4
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1.2k
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minimum number of genes - gene ontology/reactome analysis
kegg reactome GO genes
2.4 years ago by pingu77 ▴ 40
4
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1
reply
836
views
pvalue vs adjust p-value
pvalue deseq2 adjpvalue hist
updated 2.5 years ago by 11k • written 2.5 years ago by ▴ 40
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0
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936
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Comment: Comment: DEGseq - 3 conditions
2.5 years ago by pingu77 ▴ 40
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1
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936
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Comment: Comment: DEGseq - 3 conditions
2.5 years ago by pingu77 ▴ 40
1
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4
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936
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DEGseq - 3 conditions
rnaseq
2.5 years ago by pingu77 ▴ 40
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1
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1.5k
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Comment: Comment: extract indel subportion of mapped reads
2.9 years ago by pingu77 ▴ 40
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1
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1.5k
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Comment: Comment: extract indel subportion of mapped reads
2.9 years ago by pingu77 ▴ 40
2
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5
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1.5k
views
extract indel subportion of mapped reads
bed indel subreads
updated 2.9 years ago by ▴ 40 • written 2.9 years ago by ▴ 40
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0
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5.0k
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Comment: Comment: different result using minimap2 and pbmm2
3.0 years ago by pingu77 ▴ 40
5
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2
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776
views
Pacbio CSS - coverage per locus
coverage CSS pacbio consensus
updated 3.0 years ago by 102k • written 3.0 years ago by ▴ 40
1
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0
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6.3k
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Comment: Comment: align PacBio data using unaligned bam file
3.0 years ago by pingu77 ▴ 40
0
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1
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6.3k
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Comment: Comment: align PacBio data using unaligned bam file
3.0 years ago by pingu77 ▴ 40
0
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1
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6.3k
views
Comment: Comment: align PacBio data using unaligned bam file
3.0 years ago by pingu77 ▴ 40
0
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1
reply
6.3k
views
Comment: Comment: align PacBio data using unaligned bam file
3.0 years ago by pingu77 ▴ 40
0
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1
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6.3k
views
Comment: Comment: align PacBio data using unaligned bam file
3.0 years ago by pingu77 ▴ 40
0
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1
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6.3k
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Comment: Comment: align PacBio data using unaligned bam file
3.0 years ago by pingu77 ▴ 40
0
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0
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1.2k
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Comment: Comment: PacBio - reads with Q<20
3.0 years ago by pingu77 ▴ 40
1
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2
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1.2k
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PacBio - reads with Q<20
pacbio hifi quality
3.0 years ago by pingu77 ▴ 40
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0
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1.1k
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Comment: Comment: extract reads ID for each region included in a bed file and create a separate fi
3.1 years ago by pingu77 ▴ 40
0
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1
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1.1k
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Comment: Comment: extract reads ID for each region included in a bed file and create a separate fi
3.1 years ago by pingu77 ▴ 40
3
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5
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1.1k
views
extract reads ID for each region included in a bed file and create a separate file
samtools bam bed
updated 22 months ago by 45k • written 3.1 years ago by ▴ 40
2
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1
reply
607
views
sample split in multiple flowcells and lanes
scrnaseq
updated 3.1 years ago by 14k • written 3.1 years ago by ▴ 40
0
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2
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6.3k
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Comment: Comment: align PacBio data using unaligned bam file
3.1 years ago by pingu77 ▴ 40
19
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15
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6.3k
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align PacBio data using unaligned bam file
PacBio pbmm2 HiFi
3.0 years ago by pingu77 ▴ 40
0
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1
reply
2.4k
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Comment: Comment: mutation found in RNA seq data and not in DNA data
3.2 years ago by pingu77 ▴ 40
0
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1
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2.4k
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Comment: Comment: mutation found in RNA seq data and not in DNA data
3.2 years ago by pingu77 ▴ 40
0
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1
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2.4k
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Comment: Comment: mutation found in RNA seq data and not in DNA data
3.2 years ago by pingu77 ▴ 40
0
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1
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2.4k
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Comment: Comment: mutation found in RNA seq data and not in DNA data
3.2 years ago by pingu77 ▴ 40
0
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0
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2.4k
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Comment: Comment: mutation found in RNA seq data and not in DNA data
3.2 years ago by pingu77 ▴ 40
0
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0
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2.4k
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Comment: Comment: mutation found in RNA seq data and not in DNA data
3.2 years ago by pingu77 ▴ 40
7
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14
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2.4k
views
mutation found in RNA seq data and not in DNA data
dna rna cancer mutation
updated 3.2 years ago by ▴ 530 • written 3.2 years ago by ▴ 40
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