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7
votes
9
replies
14k
views
Help understanding the non-coding exons in a gene.
sequencing gene
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 310
8
votes
10
replies
4.7k
views
what does the transcription factor location tell me
genome transcription-factors
updated 2.9 years ago by 44k • written 10.3 years ago by ▴ 310
0
votes
0
replies
7.4k
views
Comment: Comment: How to get gene names from CpG islands coordinates with R/Bioconductor
updated 22 months ago by 44k • written 9.5 years ago by ▴ 310
1
vote
1
reply
4.3k
views
interpreting FIMO results - p value and q value
motif position weight matrix
9.6 years ago by Affan ▴ 310
0
votes
0
replies
2.4k
views
interpreting promoter and enhancer locations for a target gene
sequence
updated 2.6 years ago by 44k • written 9.7 years ago by ▴ 310
0
votes
1
reply
2.9k
views
calculating promoter region from TxDb for a negative strand gene
strand
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 310
0
votes
0
replies
2.9k
views
Answer: A: calculating promoter region from TxDb for a negative strand gene
9.6 years ago by Affan ▴ 310
0
votes
0
replies
3.3k
views
Comment: Comment: downloading annotated mouse genome
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 310
0
votes
2
replies
3.3k
views
downloading annotated mouse genome
genome
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 310
1
vote
3
replies
2.1k
views
an introduction to GO annotations
gene-ontology
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 310
0
votes
1
reply
8.1k
views
Comment: C: what is the motivation behind Pol2 chip-seq data?
9.7 years ago by Affan ▴ 310
7
votes
7
replies
8.1k
views
what is the motivation behind Pol2 chip-seq data?
ChIP-Seq sequence
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 310
3
votes
1
reply
1.9k
views
tools for gene annotation
GO-analysis
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 310
0
votes
1
reply
2.1k
views
how to retreive and download sequence information
sequencing databases
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 310
1
vote
1
reply
2.4k
views
How to get transcripts and TSS
promoter
updated 2.7 years ago by 44k • written 9.8 years ago by ▴ 310
0
votes
1
reply
4.3k
views
Comment: C: how to get promoter regions from a genome
9.8 years ago by Affan ▴ 310
0
votes
1
reply
4.3k
views
Comment: C: how to get promoter regions from a genome
9.8 years ago by Affan ▴ 310
0
votes
0
replies
4.3k
views
Comment: Comment: how to get promoter regions from a genome
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 310
0
votes
1
reply
4.3k
views
Comment: Comment: how to get promoter regions from a genome
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 310
2
votes
11
replies
4.3k
views
how to get promoter regions from a genome
promoter pwm
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 310
0
votes
1
reply
4.3k
views
Comment: Comment: how to get promoter regions from a genome
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 310
0
votes
1
reply
3.1k
views
Comment: Comment: Do I have to take strand information when creating a PWM?
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 310
0
votes
1
reply
3.1k
views
Comment: Comment: Do I have to take strand information when creating a PWM?
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 310
0
votes
0
replies
3.1k
views
Comment: Comment: Do I have to take strand information when creating a PWM?
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 310
1
vote
7
replies
3.1k
views
Do I have to take strand information when creating a PWM?
PWM interpretation
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 310
2
votes
1
reply
2.2k
views
how to retreive sequences given a start and end site.
alignment sequence
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 310
0
votes
1
reply
3.6k
views
Comment: Comment: How can I create a more accurate PWM?
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 310
0
votes
0
replies
3.6k
views
Comment: Comment: How can I create a more accurate PWM?
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 310
0
votes
1
reply
3.6k
views
Comment: Comment: How can I create a more accurate PWM?
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 310
5
votes
8
replies
3.6k
views
How can I create a more accurate PWM?
pwm
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 310
0
votes
0
replies
2.5k
views
how to interpret scores from a PWM match
PWM tfbs
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 310
1
vote
4
replies
2.4k
views
extracting parts of genome using R
PWM genome
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 310
0
votes
1
reply
2.4k
views
Comment: Comment: extracting parts of genome using R
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 310
0
votes
0
replies
2.8k
views
Creating a PWM from a PFM - redistribute gapped alignment count
position-weight-matrix
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 310
2
votes
0
replies
2.0k
views
creating a PWM from TFBS data in a GFF file
ChIP-Seq PWM
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 310
0
votes
2
replies
14k
views
Comment: Comment: Help understanding the non-coding exons in a gene.
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 310
0
votes
1
reply
14k
views
Comment: Comment: Help understanding the non-coding exons in a gene.
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 310
1
vote
0
replies
3.3k
views
Comment: C: Is There A Way To Get The Single Best Model From A Group Of Models/States Genera
10.2 years ago by Affan ▴ 310
0
votes
0
replies
4.7k
views
Comment: C: I have peak files for different histone modifications. How can I see them?
10.2 years ago by Affan ▴ 310
1
vote
1
reply
4.7k
views
Comment: Comment: I have peak files for different histone modifications. How can I see them?
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 310
0
votes
1
reply
4.7k
views
Comment: C: I have peak files for different histone modifications. How can I see them?
10.2 years ago by Affan ▴ 310
9
votes
13
replies
4.7k
views
I have peak files for different histone modifications. How can I see them?
visualization
updated 2.9 years ago by 44k • written 10.3 years ago by ▴ 310
0
votes
0
replies
4.7k
views
Comment: C: I have peak files for different histone modifications. How can I see them?
10.2 years ago by Affan ▴ 310
0
votes
1
reply
4.7k
views
Comment: Comment: I have peak files for different histone modifications. How can I see them?
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 310
0
votes
0
replies
4.7k
views
Comment: C: I have peak files for different histone modifications. How can I see them?
10.2 years ago by Affan ▴ 310
0
votes
0
replies
4.7k
views
Comment: A: I have peak files for different histone modifications. How can I see them?
10.2 years ago by Affan ▴ 310
2
votes
1
reply
15k
views
Comment: Comment: what is enrichment of a chip-seq experiment
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 310
0
votes
1
reply
15k
views
Comment: Comment: what is enrichment of a chip-seq experiment
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 310
0
votes
1
reply
15k
views
Comment: Comment: what is enrichment of a chip-seq experiment
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 310
21
votes
7
replies
15k
views
what is enrichment of a chip-seq experiment
ChIP-Seq
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 310
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