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137
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Datasets with RNA-seq and drug sensitivity data
drug datasets sra RNA-seq sensitivity
29 days ago by octpus616 ▴ 120
1
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0
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204
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Extract all protein-coding genes from TxDb.
R Granges IRanges Txdb
5 weeks ago by octpus616 ▴ 120
0
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0
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166
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Calculate the Distribution of Peaks in 5'UTR, 3'UTR, and CDS of Transcripts Using R
R RNA-seq GRanges
5 weeks ago by octpus616 ▴ 120
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1
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328
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Comment: Comment: Biological replicate for WGS sequencing
12 weeks ago by octpus616 ▴ 120
2
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3
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328
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Biological replicate for WGS sequencing
NGS Biological replicate WGS
updated 12 weeks ago by 148k • written 12 weeks ago by ▴ 120
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420
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Comment: Comment: TSS sites annotation for hg38
6 months ago by octpus616 ▴ 120
1
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2
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420
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TSS sites annotation for hg38
tss hg38 annotation
6 months ago by octpus616 ▴ 120
0
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1
reply
309
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Mouse ribosome sequences in fasta format
fasta mm10 rRNA
updated 7 months ago by 148k • written 7 months ago by ▴ 120
0
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0
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786
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Comment: Comment: What is the relationship between Illumina P5 P7, universal adapters, and TruSeq
8 months ago by octpus616 ▴ 120
2
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2
replies
786
views
What is the relationship between Illumina P5 P7, universal adapters, and TruSeq Adapter Index 7?
fastqc NGS
8 months ago by octpus616 ▴ 120
1
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1
reply
331
views
How to Annotating Human Genomic Variants for Disease Associations?
R variant-annotation GWAS
updated 10 months ago by 44k • written 10 months ago by ▴ 120
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0
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578
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Comment: Comment: ATCC cell line source
11 months ago by octpus616 ▴ 120
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2
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578
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ATCC cell line source
cell-line NGS ATCC
11 months ago by octpus616 ▴ 120
1
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1
reply
1.1k
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Comment: Comment: How the first sequencing template removed in pair end sequencing
14 months ago by octpus616 ▴ 120
0
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0
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1.1k
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Comment: Comment: How the first sequencing product removed in pair end sequencing
14 months ago by octpus616 ▴ 120
5
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7
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1.1k
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How the first sequencing template removed in pair end sequencing
NGS RNA-seq WGS sequence
updated 14 months ago by 148k • written 14 months ago by ▴ 120
0
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0
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366
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how simply mutation annotation in R?
annotation RNA-seq Bioconductor
15 months ago by octpus616 ▴ 120
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0
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1.2k
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Comment: Comment: STAR mapping two pass mode for multiple samples with split steps or one step ?
15 months ago by octpus616 ▴ 120
0
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2
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1.2k
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STAR mapping two pass mode for multiple samples with split steps or one step ?
STAR RNA-seq
15 months ago by octpus616 ▴ 120
0
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0
replies
1.4k
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Comment: Comment: Best practices scRNA-seq guide for beginer
15 months ago by octpus616 ▴ 120
0
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0
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1.4k
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Comment: Comment: Best practices scRNA-seq guide for beginer
15 months ago by octpus616 ▴ 120
0
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1
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1.4k
views
Comment: Comment: Best practices scRNA-seq guide for beginer
15 months ago by octpus616 ▴ 120
7
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6
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1.4k
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Best practices scRNA-seq guide for beginer
scRNA-seq eBook
15 months ago by octpus616 ▴ 120
0
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0
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415
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Make a variation record dict from vcf by pysam quickly
pysam python vcf
15 months ago by octpus616 ▴ 120
0
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0
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1000
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Comment: Comment: How to convert dnsnp in UCSC to gtf
16 months ago by octpus616 ▴ 120
2
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4
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1000
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How to convert dnsnp in UCSC to gtf
UCSC dnsnp gtf
16 months ago by octpus616 ▴ 120
0
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0
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1000
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Comment: Comment: How to convert dnsnp in UCSC to gtf
16 months ago by octpus616 ▴ 120
2
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1
reply
678
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bedtools random without strand and no overlap
bedtools genome bed
updated 17 months ago by 86k • written 17 months ago by ▴ 120
0
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0
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684
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Comment: Comment: Why is NA18498 sample missing from 1000 genome GRCh38 vcf file?
19 months ago by octpus616 ▴ 120
1
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2
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684
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Why is NA18498 sample missing from 1000 genome GRCh38 vcf file?
NGS vcf 1000 1kg genome
19 months ago by octpus616 ▴ 120
0
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0
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452
views
rtracklayer import.chain not accpect chain file
R rtracklayer liftOver
19 months ago by octpus616 ▴ 120
6
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1
reply
645
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what is IGV visualization lighter color variants stand for
visualization vcf IGV
updated 20 months ago by 14k • written 20 months ago by ▴ 120
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0
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1.1k
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Comment: Comment: Calculation method of RMSMappingQuality
20 months ago by octpus616 ▴ 120
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2
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1.1k
views
Calculation method of RMSMappingQuality
NGS bam samtools vcf
20 months ago by octpus616 ▴ 120
0
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0
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489
views
How to shift the position of multiallelic variants for phasing analysis with SHAPEIT2?
vcf bcftools shapeit2 phase NGS
updated 17 months ago by 44k • written 21 months ago by ▴ 120
0
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0
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402
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Get RMS MQ for specific POS
vcf bam MQ
21 months ago by octpus616 ▴ 120
2
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1
reply
811
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bcftools merge without multiallelic sites
NGS bcftools vcf
updated 21 months ago by ▴ 520 • written 21 months ago by ▴ 120
0
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0
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2.1k
views
Comment: Comment: Does running samtools sort in parallel result in unexpected output due to tempor
21 months ago by octpus616 ▴ 120
0
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0
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2.1k
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Comment: Comment: Does running samtools sort in parallel result in unexpected output due to tempor
21 months ago by octpus616 ▴ 120
0
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0
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2.1k
views
Comment: Comment: Does running samtools sort in parallel result in unexpected output due to tempor
21 months ago by octpus616 ▴ 120
3
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7
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2.1k
views
Does running samtools sort in parallel result in unexpected output due to temporary file conflicts?
NGS samtools bam
updated 17 months ago by 44k • written 21 months ago by ▴ 120
0
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0
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570
views
Annotate a series of genomic intervals using R as detailed as possible
bed bioconductor annotation R
22 months ago by octpus616 ▴ 120
0
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0
replies
539
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What is the different bewteen ucsc simple repeat and tandem repeat
reference USCS annotation hg38
22 months ago by octpus616 ▴ 120
0
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0
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2.0k
views
Comment: Comment: samtools calmd and original base quality
22 months ago by octpus616 ▴ 120
2
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2
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2.0k
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samtools calmd and original base quality
NGS bam samtools
22 months ago by octpus616 ▴ 120
0
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0
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1.1k
views
Comment: Comment: GATK haplotypeCaller output MQ in vcf for non variant sites
23 months ago by octpus616 ▴ 120
0
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2
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1.1k
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GATK haplotypeCaller output MQ in vcf for non variant sites
vcf MQ GATK NGS
23 months ago by octpus616 ▴ 120
0
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1
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1.5k
views
Comment: Comment: Get length of the alignment from bam file with shell
23 months ago by octpus616 ▴ 120
1
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2
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1.5k
views
Comment: Comment: Get length of the alignment from bam file with shell
23 months ago by octpus616 ▴ 120
1
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6
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1.5k
views
Get length of the alignment from bam file with shell
NGS sam pysam samtools bam
updated 23 months ago by ★ 4.0k • written 23 months ago by ▴ 120
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