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Comment: Comment: Biological meaning of metrics commonly used for QC in scRNA-seq?
20 days ago by txema.heredia ▴ 240
8
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3
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575
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Biological meaning of metrics commonly used for QC in scRNA-seq?
ribosome QC velocity single-cell intron
updated 20 days ago by ★ 19k • written 20 days ago by ▴ 240
1
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1
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712
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Comment: Comment: Differeces between Seurat::RunPCA and scater::runPCA affect downstream analyses
29 days ago by txema.heredia ▴ 240
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0
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13k
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Comment: Comment: Seurat3: RNA vs SCT assays for DotPlot
5 weeks ago by txema.heredia ▴ 240
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0
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2.2k
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Comment: Comment: Single cell demultiplexing using 10x and TotalSeq-B
5 weeks ago by txema.heredia ▴ 240
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1
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712
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Comment: Comment: Differeces between Seurat::RunPCA and scater::runPCA affect downstream analyses
6 weeks ago by txema.heredia ▴ 240
1
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5
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712
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Differeces between Seurat::RunPCA and scater::runPCA affect downstream analyses
slingshot PCA Seurat scater single-cell
updated 29 days ago by 6.4k • written 6 weeks ago by ▴ 240
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597
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Comment: Comment: Best choices for DGE and pathway enrichment analysis in single cell data using p
6 weeks ago by txema.heredia ▴ 240
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2
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597
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Best choices for DGE and pathway enrichment analysis in single cell data using pseudobulk?
DEG GSEA single-cell pseudobulk
6 weeks ago by txema.heredia ▴ 240
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0
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869
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Comment: Comment: Tool for automatic immune cell annotation in MOUSE?
12 weeks ago by txema.heredia ▴ 240
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1
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869
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Comment: Comment: Tool for automatic immune cell annotation in MOUSE?
12 weeks ago by txema.heredia ▴ 240
3
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5
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869
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Tool for automatic immune cell annotation in MOUSE?
immune single-cell annotation
12 weeks ago by txema.heredia ▴ 240
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0
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1.2k
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Comment: Comment: What is the current state of the beef against UMAP/tSNE in the context of sc tra
3 months ago by txema.heredia ▴ 240
12
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6
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1.2k
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Forum: What is the current state of the beef against UMAP/tSNE in the context of sc trajectory analysis/monocle3?
monocle3 umap single-cell tSNE trajectory
3 months ago by txema.heredia ▴ 240
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1
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1.2k
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Comment: Comment: What is the current state of the beef against UMAP/tSNE in the context of sc tra
3 months ago by txema.heredia ▴ 240
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0
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491
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Comment: Comment: Detect changes in cell viability with bulk RNA-seq?
4 months ago by txema.heredia ▴ 240
1
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2
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491
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Detect changes in cell viability with bulk RNA-seq?
DEG viability RNA
4 months ago by txema.heredia ▴ 240
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0
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414
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Minimum number of replicates when doing scRNA-seq using cell-lines?
design 10x single-cell
7 months ago by txema.heredia ▴ 240
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1
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1.0k
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Answer: Answer: DESeq2: adjusted p-values become NA when sub-setting samples
7 months ago by txema.heredia ▴ 240
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0
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4.9k
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Comment: Comment: collapsePathways function throwing error
7 months ago by txema.heredia ▴ 240
3
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4
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1.0k
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DESeq2: adjusted p-values become NA when sub-setting samples
R DEG RNA-seq DESeq2
updated 7 months ago by 152k • written 8 months ago by ▴ 240
6
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3
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999
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Does single-end short-read sequencing affect the mapping of mitochondrial and ribosomal RNA?
pair-end single-end RNA-seq
updated 11 months ago by ▴ 350 • written 11 months ago by ▴ 240
2
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0
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999
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Comment: Comment: Does single-end short-read sequencing affect the mapping of mitochondrial and ri
11 months ago by txema.heredia ▴ 240
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0
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650
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Comment: Comment: Single cell - integration after demultiplexing samples?
12 months ago by txema.heredia ▴ 240
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2
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650
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Single cell - integration after demultiplexing samples?
integration demultiplexing single-cell
12 months ago by txema.heredia ▴ 240
3
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4
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3.8k
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Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
single-cell ambient-RNA
updated 13 months ago by ★ 1.7k • written 13 months ago by ▴ 240
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1
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3.8k
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Answer: Answer: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
13 months ago by txema.heredia ▴ 240
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0
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1.5k
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Comment: Comment: How to handle duplicated genes in TCGA data?
13 months ago by txema.heredia ▴ 240
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2
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1.5k
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Answer: Answer: How to handle duplicated genes in TCGA data?
13 months ago by txema.heredia ▴ 240
0
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0
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3.8k
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Comment: Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
13 months ago by txema.heredia ▴ 240
0
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1
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13k
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Comment: Comment: biomaRt: Timeout on getBM().
14 months ago by txema.heredia ▴ 240
1
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0
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2.7k
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Answer: Answer: KEGG analysis in R
14 months ago by txema.heredia ▴ 240
0
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0
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434
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Inferring cell identity/genotype in single cells with missing information
cell seurat single score
14 months ago by txema.heredia ▴ 240
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1
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2.2k
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Comment: Comment: Single cell demultiplexing using 10x and TotalSeq-B
15 months ago by txema.heredia ▴ 240
0
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5
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2.2k
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Single cell demultiplexing using 10x and TotalSeq-B
demultiplexing cellranger antibodies single-cell
5 weeks ago by txema.heredia ▴ 240
0
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0
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1.3k
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Comment: Comment: Can I infer the fraction of replicating cells from bulk RNA-seq data?
updated 21 months ago by 45k • written 21 months ago by ▴ 240
2
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3
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1.3k
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Can I infer the fraction of replicating cells from bulk RNA-seq data?
replication apoptosis
updated 21 months ago by 45k • written 21 months ago by ▴ 240
2
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1
reply
942
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DESeq2 design comparing changes through 2 timepoints of 2 different treatments.
RNA-seq deseq2
updated 21 months ago by 15k • written 21 months ago by ▴ 240
2
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7
replies
2.2k
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Tool to search for missing genes among genome annotation versions?
annotation
updated 22 months ago by 4.7k • written 22 months ago by ▴ 240
0
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1
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2.2k
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Comment: Comment: Tool to search for missing genes among genome annotation versions?
22 months ago by txema.heredia ▴ 240
0
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1
reply
1.1k
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Help manually processing strand in paired-end reads when fishing for lariats in bulk RNA-seq
lariat splicing rna-seq
24 months ago by txema.heredia ▴ 240
0
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0
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1.1k
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Answer: Answer: Help manually processing strand in paired-end reads when fishing for lariats in
24 months ago by txema.heredia ▴ 240
0
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0
replies
608
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Differential Gene Expression analysis in heterogeneous tissues
RNA-seq deseq2
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 240
0
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0
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4.8k
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Comment: Comment: Aberrant splicing in bulk RNAseq
2.1 years ago by txema.heredia ▴ 240
0
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1
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4.8k
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Comment: Comment: Aberrant splicing in bulk RNAseq
2.1 years ago by txema.heredia ▴ 240
0
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1
reply
4.8k
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Comment: Comment: Aberrant splicing in bulk RNAseq
2.1 years ago by txema.heredia ▴ 240
0
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0
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4.8k
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Comment: Comment: Aberrant splicing in bulk RNAseq
2.1 years ago by txema.heredia ▴ 240
0
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2
replies
4.8k
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Comment: Comment: Aberrant splicing in bulk RNAseq
2.2 years ago by txema.heredia ▴ 240
0
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1
reply
4.8k
views
Comment: Comment: Aberrant splicing in bulk RNAseq
2.2 years ago by txema.heredia ▴ 240
0
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1
reply
4.8k
views
Comment: Comment: Aberrant splicing in bulk RNAseq
2.2 years ago by txema.heredia ▴ 240
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