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Comment: C: How to extract calculated RSA values from dssp and its corresponding residue?
4.0 years ago by tpm ▴ 30
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2.1k
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Comment: C: How to extract calculated RSA values from dssp and its corresponding residue?
4.0 years ago by tpm ▴ 30
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3.5k
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Comment: C: Biopython module Bio.PDB.DSSP issue with solvent accessible surface area?
4.0 years ago by tpm ▴ 30
3
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4
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2.1k
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How to extract calculated RSA values from dssp and its corresponding residue?
pdb dssp RSA biopython commandline
4.0 years ago by tpm ▴ 30
0
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3.8k
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Comment: C: Input file for CompareCluster in ClusterProfiler
4.3 years ago by tpm ▴ 30
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3.8k
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Answer: C: Input file for CompareCluster in ClusterProfiler
4.3 years ago by tpm ▴ 30
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8.8k
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Comment: C: How to run protein-protein interaction on R using STRING database
4.3 years ago by tpm ▴ 30
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697
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How can I use DAVID Database on comparing proteomic IDs from wild type and knockout strains on upregulated and downregulated protein levels?
DAVIDdatabase protein_networks
updated 4.4 years ago by 20 • written 4.5 years ago by ▴ 30
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1
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1.3k
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Answer: C: compareCluster error: On clusterProfiler DEGs enrichments analysis
4.5 years ago by tpm ▴ 30
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2
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1.3k
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compareCluster error: On clusterProfiler DEGs enrichments analysis
clusterProfiler Bioconductor R DEGs
4.5 years ago by tpm ▴ 30
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1.0k
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Comment: C: How to pull logFC values for a select ENTREZID from a gene-list on R?
4.5 years ago by tpm ▴ 30
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1.0k
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Comment: C: How to pull logFC values for a select ENTREZID from a gene-list on R?
4.5 years ago by tpm ▴ 30
0
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1
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1.0k
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Comment: C: How to pull logFC values for a select ENTREZID from a gene-list on R?
4.5 years ago by tpm ▴ 30
2
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5
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1.0k
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How to pull logFC values for a select ENTREZID from a gene-list on R?
bioconductor R DEP
4.5 years ago by tpm ▴ 30
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0
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638
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Comment: C: How to convert these IDs with slash (/) sign to a list?
4.5 years ago by tpm ▴ 30
2
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2
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638
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How to convert these IDs with slash (/) sign to a list?
gene
updated 16 months ago by 44k • written 4.5 years ago by ▴ 30
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2.1k
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Comment: C: How to simultaneously convert gene IDs to Kegg IDs for E. coli
4.5 years ago by tpm ▴ 30
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1
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2.1k
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Comment: C: How to simultaneously convert gene IDs to Kegg IDs for E. coli
4.5 years ago by tpm ▴ 30
0
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1
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2.1k
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Comment: C: How to simultaneously convert gene IDs to Kegg IDs for E. coli
4.5 years ago by tpm ▴ 30
0
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6
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2.1k
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How to simultaneously convert gene IDs to Kegg IDs for E. coli
geneID kegg bioconductor
updated 4.5 years ago by 88k • written 4.5 years ago by ▴ 30
0
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0
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2.0k
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Comment: C: kegg id convertion
4.5 years ago by tpm ▴ 30
1
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0
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2.1k
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Comment: C: What codes do I use to generate gene cluster vectors with entrez gene id on clus
4.5 years ago by tpm ▴ 30
0
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1
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995
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compareProfiler - Assistance on how I can modify codes for different states
clusterProfiler bioconductor assembly R
4.5 years ago by tpm ▴ 30
4
votes
6
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2.1k
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What codes do I use to generate gene cluster vectors with entrez gene id on clusterProfiler.
clusterProfiler enrichGO DEP R BIOCONDUCTOR
updated 3.6 years ago by 88k • written 4.5 years ago by ▴ 30
0
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0
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2.1k
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Comment: A: What codes do I use to generate gene cluster vectors with entrez gene id on clus
4.5 years ago by tpm ▴ 30
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0
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1.2k
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Comment: C: I have differentially expressed protein IDs that were scored between Wild-type E
4.5 years ago by tpm ▴ 30
0
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1
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1.2k
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Comment: C: I have differentially expressed protein IDs that were scored between Wild-type E
4.5 years ago by tpm ▴ 30
2
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4
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1.2k
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I have differentially expressed protein IDs that were scored between Wild-type E coli and E coli (with knockout gene). How can I generate a plot to s…
GeneOntology GO GOSlim Proteins
4.5 years ago by tpm ▴ 30
1
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9
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8.8k
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How to run protein-protein interaction on R using STRING database
stringdb
updated 4.5 years ago by ▴ 20 • written 4.6 years ago by ▴ 30
0
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1
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971
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Comment: C: Is it possible to convert several protein ID in to Fasta format?
4.5 years ago by tpm ▴ 30
0
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0
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983
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Comment: A: Which bioinformatic tool can I use to assess overlapping genes between 2 dataset
4.5 years ago by tpm ▴ 30
0
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3
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983
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Which bioinformatic tool can I use to assess overlapping genes between 2 datasets
bioimformatictools toolbox proteins
4.5 years ago by tpm ▴ 30
0
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7
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971
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Is it possible to convert several protein ID in to Fasta format?
sequence fasta
4.5 years ago by tpm ▴ 30
0
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1
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971
views
Comment: A: Is it possible to convert several protein ID in to Fasta format?
4.5 years ago by tpm ▴ 30
0
votes
1
reply
971
views
Comment: C: Is it possible to convert several protein ID in to Fasta format?
4.5 years ago by tpm ▴ 30
0
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1
reply
1.8k
views
Comment: C: How to run protein-protein interaction on R using STRING database
4.6 years ago by tpm ▴ 30
3
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3
replies
1.8k
views
How to run protein-protein interaction on R using STRING database
R stringdb
updated 4.6 years ago by 27k • written 4.6 years ago by ▴ 30
0
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1
reply
8.8k
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Comment: C: How to run protein-protein interaction on R using STRING database
4.6 years ago by tpm ▴ 30
0
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0
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2.8k
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Comment: C: Is it possible to select the active interaction source in R STRINGdb package lik
4.6 years ago by tpm ▴ 30
0
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0
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2.0k
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Comment: C: Pulling TSV automatically from STRINGDB
4.6 years ago by tpm ▴ 30
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