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Comment: C: Can I still detect ambient RNA if I do not have filtered gene-barcode matrix?
4.2 years ago by SupBioInformatics ▴ 70
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2
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1.8k
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Can I still detect ambient RNA if I do not have filtered gene-barcode matrix?
ambient RNA SoupX scRNA-seq single-cell
updated 4.2 years ago by 9.0k • written 4.2 years ago by ▴ 70
3
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1
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1.8k
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How to QC single-cell RNAseq data for tumor samples if data is right skewed?
scRNA QC distribution single-cell
4.2 years ago by SupBioInformatics ▴ 70
1
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2
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4.2k
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How to use "SingleR" on the marker genes from `FindAllMarkers` for each cluster?
SingleR seurat scRNAseq scRNA
updated 3.4 years ago by ▴ 10 • written 4.2 years ago by ▴ 70
2
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1
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6.4k
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Should I normalize individually or after merging all the data?
scRNA normalization seurat scale qc
updated 2 days ago by ▴ 650 • written 4.3 years ago by ▴ 70
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2
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5.5k
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Comment: C: What is the best practice of scRNA workflow for multiple patients and samples us
4.3 years ago by SupBioInformatics ▴ 70
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1
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5.5k
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Comment: C: What is the best practice of scRNA workflow for multiple patients and samples us
4.3 years ago by SupBioInformatics ▴ 70
10
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8
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5.5k
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7 follow
What is the best practice of scRNA workflow for multiple patients and samples using Seurat
scRNA sing-cell RNA seurat integrate
updated 12 weeks ago by ▴ 50 • written 4.3 years ago by ▴ 70
0
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1
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1.8k
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How to convert metabolite name/KEGG compound ID to gene ID?
geneID KEGG metabolite
updated 4.3 years ago by 20 • written 4.5 years ago by ▴ 70
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0
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937
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What are advantages to use globaltest, ORA and GSVA algorithms using different enrichment methods
RNA-Seq enrichment algorithm
4.4 years ago by SupBioInformatics ▴ 70
2
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2
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1.3k
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How to calculate foldchange for log2'd expression data?
fold-change t-test
updated 17 months ago by 44k • written 4.4 years ago by ▴ 70
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1.3k
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Comment: C: How to calculate foldchange for log2'd expression data?
4.4 years ago by SupBioInformatics ▴ 70
13
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10
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6.4k
views
6 follow
What is difference between bulk RNAseq and mRNAseq?
RNA-Seq bulk
updated 4.5 years ago by 15k • written 4.5 years ago by ▴ 70
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0
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1.0k
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Comment: C: What is REL_PATHWAY from KEGGREST
4.5 years ago by SupBioInformatics ▴ 70
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2
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1.0k
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What is REL_PATHWAY from KEGGREST
keggrest KEGG pathway R
4.5 years ago by SupBioInformatics ▴ 70
1
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1
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2.4k
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How to get KEGG pathway set with its corresponding metabolite ID/names?
metabolomics pathway KEGG signature GSEA
4.5 years ago by SupBioInformatics ▴ 70
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0
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1.4k
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Comment: C: Should I do normalization to gene/features or samples?
4.6 years ago by SupBioInformatics ▴ 70
1
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2
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1.4k
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Should I do normalization to gene/features or samples?
normalization preprocessing RNA-Seq metabolomics
updated 4.6 years ago by ▴ 230 • written 4.6 years ago by ▴ 70
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1
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2.4k
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Forum: How's the bioinformatics engineering path? How to become a bioinformatics engineer?
machine-learning Bioinformatics-engineer
updated 20 months ago by 44k • written 4.8 years ago by ▴ 70
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