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466
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Does it make sense to do hdWGCNA following the DEG analysis?
DEG WGCNA single-cell
updated 11 months ago by • 0 • written 11 months ago by ▴ 110
0
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1
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631
views
what is the best way to build my design model with DESeq2
design-model DESeq2 single-cell
updated 18 months ago by 4.7k • written 18 months ago by ▴ 110
0
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0
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676
views
Why in Heatmap plot my case and control samples of single cell dataset are not well clustered?
DESeq2 single-cell Heatmap
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 110
0
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0
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640
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Why DEG analysis of the same region in two different datasets results in different sets of DEGs?
single integration cell DEG design analysis
2.3 years ago by paria ▴ 110
4
votes
4
replies
2.1k
views
Why my single cell cluster is splitted?
clustering single-cell
updated 2.3 years ago by ★ 29k • written 2.3 years ago by ▴ 110
0
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0
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2.1k
views
Comment: Comment: Why my single cell cluster is splitted?
2.3 years ago by paria ▴ 110
0
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2
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1.0k
views
If using singeR return more clusters than available ones should I do reclustering?
singleR
updated 2.3 years ago by ★ 19k • written 2.3 years ago by ▴ 110
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0
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1.1k
views
Comment: Comment: Should I necessarily use cluster evaluation tools for my single cell dataset?
2.3 years ago by paria ▴ 110
2
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2
replies
1.1k
views
Should I necessarily use cluster evaluation tools for my single cell dataset?
single-cell cluster-evaluation scclusteval
2.3 years ago by paria ▴ 110
0
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0
replies
1.9k
views
Comment: Comment: Single cell cluster evaluation does not output reasonable number of stable clust
2.3 years ago by paria ▴ 110
0
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1
reply
1.9k
views
Comment: Comment: Single cell cluster evaluation does not output reasonable number of stable clust
2.3 years ago by paria ▴ 110
0
votes
0
replies
843
views
integration using rPCA with reference or without it?
integration Seurat rPCA Single-cell
2.3 years ago by paria ▴ 110
0
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1
reply
2.6k
views
Comment: Comment: How to convert Seurat object to sce object retaining the HVG
2.3 years ago by paria ▴ 110
2
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4
replies
2.6k
views
How to convert Seurat object to sce object retaining the HVG
HVG single-cell SingleCellExperiment seurat
updated 21 months ago by 3.3k • written 2.3 years ago by ▴ 110
1
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1
reply
1.6k
views
singleR annotation shows overlapping clusters
single cluster cell annotation singleR Seurat
updated 2.3 years ago by ★ 19k • written 2.3 years ago by ▴ 110
0
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0
replies
3.1k
views
Comment: Comment: What should I do if the gene IDs in my reference dataset and test dataset are di
2.4 years ago by paria ▴ 110
0
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1
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3.1k
views
Comment: Comment: What should I do if the gene IDs in my reference dataset and test dataset are di
2.4 years ago by paria ▴ 110
3
votes
3
replies
3.1k
views
What should I do if the gene IDs in my reference dataset and test dataset are different
gene-ID RNA-seq R singleR
2.4 years ago by paria ▴ 110
0
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1
reply
3.1k
views
Comment: Comment: How do I know if I'm overcorrecting my single cell data
2.6 years ago by paria ▴ 110
0
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0
replies
3.5k
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Comment: Comment: How to make a Dotplot like this in R for my clustered single cell data set
2.6 years ago by paria ▴ 110
0
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2
replies
3.5k
views
How to make a Dotplot like this in R for my clustered single cell data set
data single DotPlot cell
2.6 years ago by paria ▴ 110
0
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0
replies
3.1k
views
Comment: Comment: How do I know if I'm overcorrecting my single cell data
2.6 years ago by paria ▴ 110
1
vote
5
replies
3.1k
views
How do I know if I'm overcorrecting my single cell data
Rpca sn-RNA overcorrection seq seurat CCA
updated 2.6 years ago by ★ 19k • written 2.6 years ago by ▴ 110
2
votes
2
replies
3.1k
views
How should I solve the error: comparison (3) is possible only for atomic and list types
single ScaleData cell rpca analysis
updated 2.6 years ago by 152k • written 2.6 years ago by ▴ 110
0
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0
replies
888
views
Comment: Comment: Does chemistry have significant effects on my single nucleus dataset?
2.6 years ago by paria ▴ 110
0
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2
replies
888
views
Does chemistry have significant effects on my single nucleus dataset?
single-nucleus chemistry dataset
2.6 years ago by paria ▴ 110
1
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4
replies
1.9k
views
Single cell cluster evaluation does not output reasonable number of stable clusters
RNA scclusteval single-cell integration harmony sequencing
2.3 years ago by paria ▴ 110
0
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1
reply
1.9k
views
Comment: Comment: How do I know the SNPS which are removed when clumping are in a LD block or SNPs
updated 3.6 years ago by 89k • written 3.7 years ago by ▴ 110
0
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3
replies
1.9k
views
How do I know the SNPS which are removed when clumping are in a LD block or SNPs not existed in 1000 Genome
Randomization data clumping Mendelian GWAS
updated 3.6 years ago by 89k • written 3.7 years ago by ▴ 110
1
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3
replies
1.2k
views
How to process batches to be able to correct for its effect
batch-correction sample-randomization
updated 3.8 years ago by 13k • written 3.8 years ago by ▴ 110
0
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1
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1.2k
views
Comment: Comment: How to process batches to be able to correct for its effect
3.8 years ago by paria ▴ 110
0
votes
0
replies
687
views
Do I need to include the "ins:me:alu" line for my MR analysis
Randomization Mendelian data stat GWAS Summary
4.0 years ago by paria ▴ 110
0
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0
replies
9.6k
views
Answer: Answer: Low Fraction Reads in Cells (Cellranger Count Pipeline)
4.1 years ago by paria ▴ 110
0
votes
0
replies
845
views
How to update rsid given chromosome number, chr position, a1 and a2
SNP ID
4.1 years ago by paria ▴ 110
0
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0
replies
1.5k
views
Comment: Comment: Cell composition in each condition of single cell data
4.2 years ago by paria ▴ 110
0
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0
replies
1.5k
views
Comment: Comment: Cell composition in each condition of single cell data
4.2 years ago by paria ▴ 110
0
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3
replies
1.5k
views
Cell composition in each condition of single cell data
cell composition single-cell scProportionTest
4.2 years ago by paria ▴ 110
0
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1
reply
16k
views
Comment: Comment: correct way of analyzing cell proportions in singlecell data
4.2 years ago by paria ▴ 110
0
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0
replies
7.3k
views
Comment: C: regressing out covariate from Seurat integrated data
4.3 years ago by paria ▴ 110
6
votes
9
replies
7.3k
views
regressing out covariate from Seurat integrated data
single-cell seurat
updated 3.4 years ago by ▴ 10 • written 4.3 years ago by ▴ 110
0
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0
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7.3k
views
Comment: A: regressing out covariate from Seurat integrated data
4.3 years ago by paria ▴ 110
0
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0
replies
7.3k
views
Comment: C: regressing out covariate from Seurat integrated data
4.3 years ago by paria ▴ 110
0
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0
replies
842
views
Integration or not?
single-cell RNA sequencing seurat integration
4.3 years ago by paria ▴ 110
0
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0
replies
2.5k
views
Comment: C: Unused argument in R
4.3 years ago by paria ▴ 110
4
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8
replies
2.5k
views
Unused argument in R
R
4.3 years ago by paria ▴ 110
0
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0
replies
4.1k
views
Comment: C: How to regress out variants using SCTransform function?
4.3 years ago by paria ▴ 110
0
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1
reply
4.1k
views
Comment: C: How to regress out variants using SCTransform function?
4.3 years ago by paria ▴ 110
0
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1
reply
4.1k
views
Comment: C: How to regress out variants using SCTransform function?
updated 4.3 years ago by 13k • written 4.3 years ago by ▴ 110
0
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1
reply
4.1k
views
Comment: C: How to regress out variants using SCTransform function?
updated 4.3 years ago by 13k • written 4.3 years ago by ▴ 110
2
votes
7
replies
4.1k
views
How to regress out variants using SCTransform function?
Single-nuclei RNA sequencing SCTransform Seurat
4.3 years ago by paria ▴ 110
57 results • Page 1 of 2
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