Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
531
views
resequensing of the whole sample or sequencing to X k reads and merging files
RNA-seq sequencing-depth
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 30
0
votes
0
replies
654
views
Comment: Comment: Fastq Screen shows many unmapped reads
2.5 years ago by esimonova.me ▴ 30
0
votes
2
replies
654
views
Fastq Screen shows many unmapped reads
fastq_screen
2.5 years ago by esimonova.me ▴ 30
0
votes
0
replies
640
views
conumee - adding bed file instead of sample detailed regions
conumee R rtracklayer
3.3 years ago by esimonova.me ▴ 30
2
votes
1
reply
706
views
Immune repertoire reconstruction from RNA-seq data
TCR-seq
updated 3.4 years ago by ▴ 270 • written 3.4 years ago by ▴ 30
0
votes
0
replies
559
views
Genome reference with haplotypes
reference haplotypes
3.4 years ago by esimonova.me ▴ 30
0
votes
1
reply
728
views
Deconvolution/quantification of immune cell types in Macaca Mulatta
RNA-seq deconvolution
updated 3.4 years ago by • 0 • written 3.4 years ago by ▴ 30
0
votes
0
replies
2.8k
views
Answer: Answer: Find Information about TCGA samples from GDC data portal
3.6 years ago by esimonova.me ▴ 30
11
votes
4
replies
4.1k
views
RNASEQ - Mapping to genome or Transcriptome
mapping RNAseq
updated 3.6 years ago by ▴ 590 • written 3.6 years ago by ▴ 30
0
votes
0
replies
11k
views
Comment: Comment: Matplotlib comprehensive chromosome drawing
3.7 years ago by esimonova.me ▴ 30
0
votes
1
reply
1.6k
views
Comment: Comment: Strand specific library
3.7 years ago by esimonova.me ▴ 30
3
votes
6
replies
1.6k
views
Strand specific library
htseq
updated 3.7 years ago by 4.1k • written 3.7 years ago by ▴ 30
0
votes
0
replies
1.6k
views
Comment: Comment: Strand specific library
3.7 years ago by esimonova.me ▴ 30
0
votes
0
replies
982
views
mSINGs - pipeline
MSI
3.8 years ago by esimonova.me ▴ 30
0
votes
0
replies
618
views
Freebayes - too many variants produced on WES sample
Freebayes
3.9 years ago by esimonova.me ▴ 30
0
votes
0
replies
590
views
Simulated data or pseudoreplicatesreported in papers
pseudoreplicates SNPs INDELs
3.9 years ago by esimonova.me ▴ 30
0
votes
0
replies
582
views
plink - generate VCF
plink
3.9 years ago by esimonova.me ▴ 30
0
votes
1
reply
841
views
Precision of variant calling (INDELs)
INDELs hap.py
updated 4.0 years ago by ▴ 290 • written 4.0 years ago by ▴ 30
0
votes
0
replies
595
views
Validation of Bioinformatics pipeline with NA12763
hap.py
updated 2.0 years ago by 45k • written 4.0 years ago by ▴ 30
0
votes
0
replies
658
views
GATK VQSR filter
NA12878 VariantRecallibration
4.0 years ago by esimonova.me ▴ 30
0
votes
1
reply
810
views
Mendelian vs Inherited variants
inherited mendelian
updated 4.0 years ago by ★ 3.0k • written 4.0 years ago by ▴ 30
0
votes
1
reply
1.2k
views
Effective subsampling of BAMs
BAM sampling
updated 4.1 years ago by 87k • written 4.1 years ago by ▴ 30
0
votes
1
reply
1.0k
views
How many INDELs and SNPs should I expect in vcf file and what the best parameters to filter false positives?
variants WES WGS
updated 4.1 years ago by 24k • written 4.1 years ago by ▴ 30
2
votes
1
reply
1.0k
views
BAM FLAG mate unmappedand mate reverse strand
BAM
updated 4.1 years ago by 21k • written 4.1 years ago by ▴ 30
0
votes
0
replies
4.0k
views
Answer: A: BED intersects/overlaps output for Venn diagrams - single column
4.5 years ago by esimonova.me ▴ 30
0
votes
1
reply
831
views
Difference between Amlicon and Enrichment libraries
next-gen
updated 4.5 years ago by 13k • written 4.5 years ago by ▴ 30
0
votes
0
replies
849
views
Error running Genomic Vis vcf.venn(vcf.files, 'GRCh38', sample.names)
GenomicVis
4.7 years ago by esimonova.me ▴ 30
27 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6